LXL04_009967 | RubberDandelionOmics

Gene overview

LXL04_009967

Reference: OH-1004 Chr: Chr02 Coordinates: 136890548-136892914 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · LXL04_009967|LXL04_009967|OH1004|cDNA

ATGGGTGAAGAAGTAAGTTTCATTTCTATACATATCACTATACATATATACTTaaatttatgtcatttgaaggagaagaaagaagaagagaagaaggaagatgaaaaagaggaggagaagaagaaagaagaagaggtTCCTCAAGAAGTTGTGTTAAAGGTTGATATGCATTGTGGGGCTTGTGCTAGAAAAGTCGCAAGATCCTTGAGAGGATTCCAAGGTGTCGAAGAAGTAACCACGGATTGCAAAGCGAGTAAAGT...

CDS

Download CDS FASTA

858 bp · LXL04_009967|LXL04_009967|OH1004|CDS

ATGGGTGAAGAAGTAAGTTTCATTTCTATACATATCACTATACATATATACTTAAATTTATGTCATTTGAAGGAGAAGAAAGAAGAAGAGAAGAAGGAAGATGAAAAAGAGGAGGAGAAGAAGAAAGAAGAAGAGGTTCCTCAAGAAGTTGTGTTAAAGGTTGATATGCATTGTGGGGCTTGTGCTAGAAAAGTCGCAAGATCCTTGAGAGGATTCCAAGGTGTCGAAGAAGTAACCACGGATTGCAAAGCGAGTAAAGT...

Protein

Download Protein FASTA

285 aa · LXL04_009967|LXL04_009967|OH1004|PROTEIN

MGEEVSFISIHITIHIYLNLCHLKEKKEEEKKEDEKEEEKKKEEEVPQEVVLKVDMHCGACARKVARSLRGFQGVEEVTTDCKASKVVVKGKDLDPIKVSERIQKKSGRKVEIISPLPKPPESEPEKKQEPESLKDEKKPEPPAVITVVLKMSMHCDACAQGLQRRIRKIPGVESVKTDLANEQVVVTGVLEPEKFVNDVYKRTRKQASIVVKAEEKKEEEKKEEEKKKEEEGETKKEETVEIKNEEETNTETKKMEYWP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009967`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009967

Location Chr02:136890548-136892914 (-)

Description Similar to HIPP08: Heavy metal-associated isoprenylated plant protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02960`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g63530`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g24580`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g03380`	Heavy-metal-binding protein.	Functional characterization of a heavy metal binding protein CdI19 from Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01412.x
`At5g60800`	Heavy-metal-binding protein.	The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana.2015 · DOI: 10.1111/nph.13419

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009967 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009910 negative regulation of flower development Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0046914 transition metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G02960

ath:AT5G03380

ath:AT5G24580

ath:AT5G60800

ath:AT5G63530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590

Rank 1 · LXL04_009967 · OH-1004

Cell membrane0.308

Rank 2 · LXL04_009967 · OH-1004

Nucleus0.257

Rank 3 · LXL04_009967 · OH-1004

Endoplasmic reticulum0.045

Rank 4 · LXL04_009967 · OH-1004

Mitochondrion0.040

Rank 5 · LXL04_009967 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403.33HMA52-105 aa

PF00403.33HMA153-198 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009967	`PF00403.33`	HMA	52	105	4.5e-25	88.5
LXL04_009967	`PF00403.33`	HMA	153	198	4.5e-25	88.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8T7`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 8	35.496%	Swiss-Prot	moderate database homology
`Q9C5D3`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 7	56.098%	Swiss-Prot	moderate database homology
`Q9FLU5`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 9	39.053%	Swiss-Prot	moderate database homology
`Q9LZF1`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 6	31.839%	Swiss-Prot	moderate database homology
`Q9FJH5`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 3	31.597%	Swiss-Prot	moderate database homology

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