LXL04_009781 | RubberDandelionOmics

Gene overview

LXL04_009781

Reference: OH-1004 Chr: Chr02 Coordinates: 133297825-133299009 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

483 bp · LXL04_009781|LXL04_009781|OH1004|cDNA

ATGGCTAACAAAGTAATCGGCGCGCTTGTGTGTCTTGTCATTATTGCATTGGATATAACTGCGGGTATTCTTGGGATCAGGGCTGAAGCAGCCCAAAACCAGGAGAAGCATTTGAGGTTGTGGTTGTTTGAATGCAAAGAACCAAGCCATGAAGCTTATAGGCTAGGGTTGGCTGCCATTGTGCTCTTGATTGCAGCCCATGCGTTAGCCAATTTGCTAAGTGGGTGCGCGGTTTGTAGCCATGATGAAGTCCAAAAAGC...

CDS

Download CDS FASTA

483 bp · LXL04_009781|LXL04_009781|OH1004|CDS

ATGGCTAACAAAGTAATCGGCGCGCTTGTGTGTCTTGTCATTATTGCATTGGATATAACTGCGGGTATTCTTGGGATCAGGGCTGAAGCAGCCCAAAACCAGGAGAAGCATTTGAGGTTGTGGTTGTTTGAATGCAAAGAACCAAGCCATGAAGCTTATAGGCTAGGGTTGGCTGCCATTGTGCTCTTGATTGCAGCCCATGCGTTAGCCAATTTGCTAAGTGGGTGCGCGGTTTGTAGCCATGATGAAGTCCAAAAAGC...

Protein

Download Protein FASTA

160 aa · LXL04_009781|LXL04_009781|OH1004|PROTEIN

MANKVIGALVCLVIIALDITAGILGIRAEAAQNQEKHLRLWLFECKEPSHEAYRLGLAAIVLLIAAHALANLLSGCAVCSHDEVQKASLGRQLSLLSLFFTWVILAVGLGMLVIGTKANSKSNASCGLSHHRFLSIGGILCFVHSLFSIAYYVTATASIH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009781`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009781

Location Chr02:133297825-133299009 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32280`	Required, together with OPS, for embryo provasculature development and cotyledon vascular complexity and connectivity.	Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves.2018 · DOI: 10.1111/nph.14898
`At4g21310`	Involved, partially redundantly with VCC/DEAL1 and DEAL3, to ensure bilateral symmetry development and early leaf margin patterning, probably via the regulation of auxin and CUC2 distribution.	Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves.2018 · DOI: 10.1111/nph.14898
`At1g11500`	Involved, partially redundantly with VCC/DEAL1 and DEAL2, to ensure bilateral symmetry development and early leaf margin patterning, probably via the regulation of auxin and CUC2 distribution.	Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves.2018 · DOI: 10.1111/nph.14898
`At1g05291`	Protein DESIGUAL 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009781 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009855 determination of bilateral symmetry Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010305 leaf vascular tissue pattern formation Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0048366 leaf development Biological Process

GO:0048825 cotyledon development Biological Process

GO:0140964 intracellular auxin homeostasis Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G05291

ath:AT1G11500

ath:AT2G32280

ath:AT4G21310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.595

Rank 1 · LXL04_009781 · OH-1004

Lysosome / Vacuole0.175

Rank 2 · LXL04_009781 · OH-1004

Cytoplasm0.135

Rank 3 · LXL04_009781 · OH-1004

Endoplasmic reticulum0.134

Rank 4 · LXL04_009781 · OH-1004

Golgi apparatus0.061

Rank 5 · LXL04_009781 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06749.18DUF121859-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009781	`PF06749.18`	DUF1218	59	146	1.6e-18	67.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZV57`	Arabidopsis thaliana	Protein VASCULATURE COMPLEXITY AND CONNECTIVITY	61.146%	Swiss-Prot	strong database homology
`O81898`	Arabidopsis thaliana	Protein DESIGUAL 2	55.769%	Swiss-Prot	strong database homology
`A2RVQ4`	Arabidopsis thaliana	Protein DESIGUAL 3	40.373%	Swiss-Prot	moderate database homology
`O23040`	Arabidopsis thaliana	Protein DESIGUAL 4	34.483%	Swiss-Prot	moderate database homology

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