LXL04_009616 | RubberDandelionOmics

Gene overview

LXL04_009616

Reference: OH-1004 Chr: Chr02 Coordinates: 129783129-129790877 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

513 bp · LXL04_009616|LXL04_009616|OH1004|cDNA

ATGTGGGGGAGGCGAGGGTGGTTGTCTGGTCAGAAAAGGTGGCCACTTATTCCAACAAACATCACCACCGATGACCTTCACTGGAAAGCACAAGCTCTCTCATCGCCACCTTTTCATCCGATTTTATTTGACGGGGTGGGATTTAAGGCGACCTCCGCATCTTCGCATCTCCTTCAGTTCGGCGCCCTCATGGAGAACTCCCGACGAGCCGCTACAGTTGGAGAACCCTTCATCCTGGACCACCGCAGCAACAGGACTCC...

CDS

Download CDS FASTA

513 bp · LXL04_009616|LXL04_009616|OH1004|CDS

ATGTGGGGGAGGCGAGGGTGGTTGTCTGGTCAGAAAAGGTGGCCACTTATTCCAACAAACATCACCACCGATGACCTTCACTGGAAAGCACAAGCTCTCTCATCGCCACCTTTTCATCCGATTTTATTTGACGGGGTGGGATTTAAGGCGACCTCCGCATCTTCGCATCTCCTTCAGTTCGGCGCCCTCATGGAGAACTCCCGACGAGCCGCTACAGTTGGAGAACCCTTCATCCTGGACCACCGCAGCAACAGGACTCC...

Protein

Download Protein FASTA

170 aa · LXL04_009616|LXL04_009616|OH1004|PROTEIN

MWGRRGWLSGQKRWPLIPTNITTDDLHWKAQALSSPPFHPILFDGVGFKATSASSHLLQFGALMENSRRAATVGEPFILDHRSNRTPTQEETSQQPQDSTSTTKYTSTKIDCKGACAARCQLSKRPNLCHRACGTCCGRCNCVPPGTSGNYESCACYANMTTRGNKKKCP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009616`
TK1151 ID	TkA03G451440
OH-1004 ID	LXL04_009616
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009616

Location Chr02:129783129-129790877 (-)

Description Similar to SN2: Snakin-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75750`	Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.	No verified direct reference in this release
`At2g18420`	Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.	No verified direct reference in this release
`At4g09600`	Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.	No verified direct reference in this release
`At1g22690`	Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009616 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT1G22690

ath:AT1G75750

ath:AT2G18420

ath:AT4G09600

sot:102582131

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.493

Rank 1 · LXL04_009616 · OH-1004

Cytoplasm0.146

Rank 2 · LXL04_009616 · OH-1004

Nucleus0.116

Rank 3 · LXL04_009616 · OH-1004

Endoplasmic reticulum0.115

Rank 4 · LXL04_009616 · OH-1004

Cell membrane0.072

Rank 5 · LXL04_009616 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02704.20GASA111-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009616	`PF02704.20`	GASA	111	170	2.7e-20	73.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P46689`	Arabidopsis thaliana	Gibberellin-regulated protein 1	70.312%	Swiss-Prot	weak database homology
`F4IQJ4`	Arabidopsis thaliana	Gibberellin-regulated protein 11	63.768%	Swiss-Prot	weak database homology
`P46687`	Arabidopsis thaliana	Gibberellin-regulated protein 3	65.079%	Swiss-Prot	weak database homology
`Q8GWK5`	Arabidopsis thaliana	Gibberellin-regulated protein 9	51.852%	Swiss-Prot	weak database homology

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