LXL04_009582 | RubberDandelionOmics

Gene overview

LXL04_009582

Reference: OH-1004 Chr: Chr02 Coordinates: 129240554-129242211 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

417 bp · LXL04_009582|LXL04_009582|OH1004|cDNA

ATGGATACAGTCGTTGACAGGATCAAGGAAGCATCACATATTCAAATCCAGCGTCGGATCAATTTTCATCTAGACCTCTGCAACTTTCCCTTCCCCCGAGCTCAGCTAgcagcgatggcttccctgcTCAAACGCGACACCTTTGCTGTCCTTCGATCTCACCATCCACTGGCGGCGGAGGTTTTGCAATTTCAATCTAGACGTCAACTTCATGTCGAAGCTGGCGCTCGCGAGAAAGCCCTTTTGGCAAAAGACCCAGC...

CDS

Download CDS FASTA

417 bp · LXL04_009582|LXL04_009582|OH1004|CDS

ATGGATACAGTCGTTGACAGGATCAAGGAAGCATCACATATTCAAATCCAGCGTCGGATCAATTTTCATCTAGACCTCTGCAACTTTCCCTTCCCCCGAGCTCAGCTAGCAGCGATGGCTTCCCTGCTCAAACGCGACACCTTTGCTGTCCTTCGATCTCACCATCCACTGGCGGCGGAGGTTTTGCAATTTCAATCTAGACGTCAACTTCATGTCGAAGCTGGCGCTCGCGAGAAAGCCCTTTTGGCAAAAGACCCAGC...

Protein

Download Protein FASTA

138 aa · LXL04_009582|LXL04_009582|OH1004|PROTEIN

MDTVVDRIKEASHIQIQRRINFHLDLCNFPFPRAQLAAMASLLKRDTFAVLRSHHPLAAEVLQFQSRRQLHVEAGAREKALLAKDPALERFKSYRKGASSIRRIGDYLTIAVVAGCCYEIYVRAVTREEARKAASGNA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009582`
TK1151 ID	TkA03G449740
OH-1004 ID	LXL04_009582
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009582

Location Chr02:129240554-129242211 (-)

Description Similar to SDH7B: Succinate dehydrogenase subunit 7B, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62575`	Succinate dehydrogenase subunit 7B, mitochondrial.	No verified direct reference in this release
`At3g47833`	Succinate dehydrogenase subunit 7A, mitochondrial.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0382500`	Succinate dehydrogenase subunit 7, mitochondrial.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009582 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0045273 respiratory chain complex II (succinate dehydrogenase) Cellular Component

GO:0043495 protein-membrane adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT3G47833

ath:AT5G62575

dosa:Os09g0382500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.925

Rank 1 · LXL04_009582 · OH-1004

Nucleus0.067

Rank 2 · LXL04_009582 · OH-1004

Cytoplasm0.055

Rank 3 · LXL04_009582 · OH-1004

Cell membrane0.021

Rank 4 · LXL04_009582 · OH-1004

Plastid0.016

Rank 5 · LXL04_009582 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27931.1SDH739-123 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009582	`PF27931.1`	SDH7	39	123	7.3e-35	119.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E870`	Arabidopsis thaliana	Succinate dehydrogenase subunit 7B, mitochondrial	64.615%	Swiss-Prot	weak database homology
`Q9C5E8`	Arabidopsis thaliana	Succinate dehydrogenase subunit 7A, mitochondrial	66.667%	Swiss-Prot	moderate database homology
`Q6H611`	Oryza sativa subsp. japonica	Succinate dehydrogenase subunit 7, mitochondrial	45.455%	Swiss-Prot	moderate database homology

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