LXL04_009550 | RubberDandelionOmics

Gene overview

LXL04_009550

Reference: OH-1004 Chr: Chr02 Coordinates: 128784055-128787756 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

744 bp · LXL04_009550|LXL04_009550|OH1004|cDNA

ATGTCAGAACAATCGATTAGAGAAGCGACTACATCAACGGAAAGTTTAAGTAGAAATGAAAAGGAAATAGATGAAAGAGATCAAAACAATTTGGAGAATATTACAACGTTGCAAGTAACTGGACCACCACCGGCATTTGACCccttaaaaaaaattaaagaagGGTTTAACCACTTCAAGATTAATGACTTCAACAAAAATACAGCTTACTATCGTAAATTGGCTGAGAAAGATGAGCCGAAGTTTCTAATATTTGCTTG...

CDS

Download CDS FASTA

744 bp · LXL04_009550|LXL04_009550|OH1004|CDS

ATGTCAGAACAATCGATTAGAGAAGCGACTACATCAACGGAAAGTTTAAGTAGAAATGAAAAGGAAATAGATGAAAGAGATCAAAACAATTTGGAGAATATTACAACGTTGCAAGTAACTGGACCACCACCGGCATTTGACCCCTTAAAAAAAATTAAAGAAGGGTTTAACCACTTCAAGATTAATGACTTCAACAAAAATACAGCTTACTATCGTAAATTGGCTGAGAAAGATGAGCCGAAGTTTCTAATATTTGCTTG...

Protein

Download Protein FASTA

247 aa · LXL04_009550|LXL04_009550|OH1004|PROTEIN

MSEQSIREATTSTESLSRNEKEIDERDQNNLENITTLQVTGPPPAFDPLKKIKEGFNHFKINDFNKNTAYYRKLAEKDEPKFLIFACSDSRVCPANVLNLRPGEAFVNRNIANMVPVSNKAKYCEIGAIIKYAIAVKKVEAILVMGHSRCGGINRLVSLPDKQTSSDFVDEWVSLGKAAKKKVLAKNPKASGEQLRTLVEKESVMGSLANLLSYPLVKTGVANKKIKLIGGYYDFVKGNFDILGTRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009550`
TK1151 ID	TkA03G447290
OH-1004 ID	LXL04_009550
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009550

Location Chr02:128784055-128787756 (+)

Description Similar to Carbonic anhydrase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01500`	Reversible hydration of carbon dioxide.	Reduction of plastid-localized carbonic anhydrase activity results in reduced Arabidopsis seedling survivorship.2008 · DOI: 10.1104/pp.108.118661 S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity.2009 · DOI: 10.1074/jbc.m806782200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009550 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0010037 response to carbon dioxide Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0015976 carbon utilization Biological Process

GO:0015979 photosynthesis Biological Process

GO:0050832 defense response to fungus Biological Process

GO:2000122 negative regulation of stomatal complex development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G01500

nta:107822687

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.635

Rank 1 · LXL04_009550 · OH-1004

Nucleus0.271

Rank 2 · LXL04_009550 · OH-1004

Cell membrane0.152

Rank 3 · LXL04_009550 · OH-1004

Mitochondrion0.119

Rank 4 · LXL04_009550 · OH-1004

Endoplasmic reticulum0.053

Rank 5 · LXL04_009550 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00484.25Pro_CA83-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009550	`PF00484.25`	Pro_CA	83	239	4.3e-39	135.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P27140`	Arabidopsis thaliana	Beta carbonic anhydrase 1, chloroplastic	44.758%	Swiss-Prot	moderate database homology

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