LXL04_009512 | RubberDandelionOmics

Gene overview

LXL04_009512

Reference: OH-1004 Chr: Chr02 Coordinates: 127792068-127799561 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_009512|LXL04_009512|OH1004|cDNA

ATGTTGAACCTCCCCATATATATTTGTGTATGTTTATTTGGTGTTATAACATTGGCGTCGAAGGTTGTGATAAGGTGTACGCCAAACATGAAGGGAACTATGAGGTACTTGGCTGGGATTGCAGGTCAAAGTGGATATGGATCAAAGTCAACTGCTGATCAAGTTACTCAAGATTGTTCTTCCATCCCTCCTCATCTCACTGCTATTGTCACCGGAGCAACGTCAGGAATTGGGGCAGAGACAGCTAGAGTGTTAGCAAA...

CDS

Download CDS FASTA

1080 bp · LXL04_009512|LXL04_009512|OH1004|CDS

ATGTTGAACCTCCCCATATATATTTGTGTATGTTTATTTGGTGTTATAACATTGGCGTCGAAGGTTGTGATAAGGTGTACGCCAAACATGAAGGGAACTATGAGGTACTTGGCTGGGATTGCAGGTCAAAGTGGATATGGATCAAAGTCAACTGCTGATCAAGTTACTCAAGATTGTTCTTCCATCCCTCCTCATCTCACTGCTATTGTCACCGGAGCAACGTCAGGAATTGGGGCAGAGACAGCTAGAGTGTTAGCAAA...

Protein

Download Protein FASTA

359 aa · LXL04_009512|LXL04_009512|OH1004|PROTEIN

MLNLPIYICVCLFGVITLASKVVIRCTPNMKGTMRYLAGIAGQSGYGSKSTADQVTQDCSSIPPHLTAIVTGATSGIGAETARVLAKRGVKIVMPARDLKKAARVKENILKEHPKANIIILEIDLSSFASIRKFCSEFLSLDIPLNILINNAGKFSQKLEFSEDKFEMTFATNYLGHFLLTELLLEKMIDTTRKTRVQGRIVNVSSVIHGWVKMEHFNFNRMLQPTNYNATRAYAQSKLANIMHAKELATQMKAINANIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009512`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009512

Location Chr02:127792068-127799561 (+)

Description Similar to TIC32B: Short-chain dehydrogenase TIC 32 B, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23430`	Involved in protein precursor import into chloroplasts.	Tic32, an essential component in chloroplast biogenesis.2004 · DOI: 10.1074/jbc.m402817200

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009512 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT4G23430

bna:106397857

hsa:57665

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.336

Rank 1 · LXL04_009512 · OH-1004

Endoplasmic reticulum0.280

Rank 2 · LXL04_009512 · OH-1004

Cytoplasm0.179

Rank 3 · LXL04_009512 · OH-1004

Peroxisome0.116

Rank 4 · LXL04_009512 · OH-1004

Cell membrane0.080

Rank 5 · LXL04_009512 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short67-208 aa

PF08659.17KR67-190 aa

PF01370.28Epimerase69-261 aa

PF13561.13adh_short_C272-279 aa

PF00106.32adh_short228-274 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009512	`PF00106.32`	adh_short	67	208	1.6e-34	119.9
LXL04_009512	`PF08659.17`	KR	67	190	3.1e-08	34.5
LXL04_009512	`PF01370.28`	Epimerase	69	261	3.2e-08	34.0
LXL04_009512	`PF13561.13`	adh_short_C2	72	279	1.1e-18	68.5
LXL04_009512	`PF00106.32`	adh_short	228	274	1.6e-34	119.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A2RVM0`	Arabidopsis thaliana	Short-chain dehydrogenase TIC 32, chloroplastic	47.883%	Swiss-Prot	moderate database homology

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