LXL04_009510 | RubberDandelionOmics

Gene overview

LXL04_009510

Reference: OH-1004 Chr: Chr02 Coordinates: 127685557-127688500 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · LXL04_009510|LXL04_009510|OH1004|cDNA

ATGACACCTCACCCTCAGATAGACGATGATGACGATTTTGATGGTGATTTTCCTGGAGCCGACAACACCAGGCGCGCAGGCACTAAGAGGAGCTTTGGAGATCTtgatgatgaggaagatgaTATTTTTGGCTCCAAAAAGGCTAACACAAAAACAGAAGAAACTGCACCAGGTGTAGCAACTGGGATGATTTTATCACTGCGTGAGAGTCTCCAGAGCTGTAAGGATAATCTTGCAACATGCCAATCAGAGCTTGAAGC...

CDS

Download CDS FASTA

939 bp · LXL04_009510|LXL04_009510|OH1004|CDS

ATGACACCTCACCCTCAGATAGACGATGATGACGATTTTGATGGTGATTTTCCTGGAGCCGACAACACCAGGCGCGCAGGCACTAAGAGGAGCTTTGGAGATCTTGATGATGAGGAAGATGATATTTTTGGCTCCAAAAAGGCTAACACAAAAACAGAAGAAACTGCACCAGGTGTAGCAACTGGGATGATTTTATCACTGCGTGAGAGTCTCCAGAGCTGTAAGGATAATCTTGCAACATGCCAATCAGAGCTTGAAGC...

Protein

Download Protein FASTA

312 aa · LXL04_009510|LXL04_009510|OH1004|PROTEIN

MTPHPQIDDDDDFDGDFPGADNTRRAGTKRSFGDLDDEEDDIFGSKKANTKTEETAPGVATGMILSLRESLQSCKDNLATCQSELEATKSEIQKWHSAFQNESVITTEPTNAVSYLQNLKSSEELLRDQLEKAKKKEAAFIVTIAKREQEISDLKSAVRDLRSQLKPPSMQGRRLLLDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEEIGNQAKEGKIHELSMKLALHKSQNLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009510`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009510

Location Chr02:127685557-127688500 (-)

Description Similar to FIP37: FKBP12-interacting protein of 37 kDa

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54170`	Probable regulatory subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation at the 5'-[AG]GAC-3' consensus sites of some mRNAs.	The immunophilin-interacting protein AtFIP37 from Arabidopsis is essential for plant development and is involved in trichome endoreduplication.2004 · DOI: 10.1104/pp.103.028050

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009510 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000375 RNA splicing, via transesterification reactions Biological Process

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0001510 RNA methylation Biological Process

GO:0006397 mRNA processing Biological Process

GO:0007530 sex determination Biological Process

GO:0007539 primary sex determination, soma Biological Process

GO:0007548 sex differentiation Biological Process

GO:0008380 RNA splicing Biological Process

GO:0009637 response to blue light Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0016556 mRNA modification Biological Process

GO:0019099 female germ-line sex determination Biological Process

KEGG gene cross-reference

ath:AT3G54170

dme:Dmel_CG6315

hsa:9589

mmu:60532

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.631

Rank 1 · LXL04_009510 · OH-1004

Cytoplasm0.355

Rank 2 · LXL04_009510 · OH-1004

Golgi apparatus0.031

Rank 3 · LXL04_009510 · OH-1004

Cell membrane0.031

Rank 4 · LXL04_009510 · OH-1004

Mitochondrion0.030

Rank 5 · LXL04_009510 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13870.12CCDC113_CCDC96_CC110-208 aa

PF17098.11Wtap132-286 aa

PF27954.1CCDC192232-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009510	`PF13870.12`	CCDC113_CCDC96_CC	110	208	2.9e-06	27.8
LXL04_009510	`PF17098.11`	Wtap	132	286	9.9e-56	188.7
LXL04_009510	`PF27954.1`	CCDC192	232	311	2.8e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSZ8`	Arabidopsis thaliana	FKBP12-interacting protein of 37 kDa	70.423%	Swiss-Prot	strong database homology

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