LXL04_009503 | RubberDandelionOmics

Gene overview

LXL04_009503

Reference: OH-1004 Chr: Chr02 Coordinates: 127613804-127618183 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2310 bp · LXL04_009503|LXL04_009503|OH1004|cDNA

ATGGCCTCAGCTTCGCAAAAGACGTCGCATTCCTCCGATGATTCCCTTCCAATCCGCCGTCAAATTGTTCCAGCCTCTGCCGACGTCTTCGTCGTCCAGGATTGGAATAACGACGATCAGGCGCTGCCGATCAAGAATTCCGCGATCAGTCCTTCTGATCCTTCCGCTAATGCTCCGACGAAAGGAATCCAAGTCCTAACAAGAGCTCAAACCAGTCATCCATTGGATCCATTATCTGCTGCTGAAATCAAAGTAGCTGT...

CDS

Download CDS FASTA

2310 bp · LXL04_009503|LXL04_009503|OH1004|CDS

ATGGCCTCAGCTTCGCAAAAGACGTCGCATTCCTCCGATGATTCCCTTCCAATCCGCCGTCAAATTGTTCCAGCCTCTGCCGACGTCTTCGTCGTCCAGGATTGGAATAACGACGATCAGGCGCTGCCGATCAAGAATTCCGCGATCAGTCCTTCTGATCCTTCCGCTAATGCTCCGACGAAAGGAATCCAAGTCCTAACAAGAGCTCAAACCAGTCATCCATTGGATCCATTATCTGCTGCTGAAATCAAAGTAGCTGT...

Protein

Download Protein FASTA

769 aa · LXL04_009503|LXL04_009503|OH1004|PROTEIN

MASASQKTSHSSDDSLPIRRQIVPASADVFVVQDWNNDDQALPIKNSAISPSDPSANAPTKGIQVLTRAQTSHPLDPLSAAEIKVAVATVRAAGATPEVRDGMRFVEVVLSEPDKNIVALADAYFFPPFQPSLLPRSKGGAVIPTKLPPRRARLVVYNKKSNKTSVWIVELSEVHATTRGGHHRGKVISSKVVLDVQPPMDAVEYADCEAVVKDYPPFREAMKKRGIEDMDLVMVDAWCVGYHSEADAPSRRLAKPLIFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009503`
TK1151 ID	TkA03G443030
OH-1004 ID	LXL04_009503
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009503

Location Chr02:127613804-127618183 (+)

Description Similar to maoII: Copper methylamine oxidase (Arthrobacter sp. (strain P1)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42490`	Involved in putrescine catabolism in peroxisomes.	Copper-containing amine oxidases contribute to terminal polyamine oxidation in peroxisomes and apoplast of Arabidopsis thaliana.2013 · DOI: 10.1186/1471-2229-13-109

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009503 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0009308 amine metabolic process Biological Process

GO:0009447 putrescine catabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0010311 lateral root formation Biological Process

GO:0042179 nicotine biosynthetic process Biological Process

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT2G42490

nta:107768026

nta:107807126

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.521

Rank 1 · LXL04_009503 · OH-1004

Cytoplasm0.234

Rank 2 · LXL04_009503 · OH-1004

Mitochondrion0.119

Rank 3 · LXL04_009503 · OH-1004

Endoplasmic reticulum0.098

Rank 4 · LXL04_009503 · OH-1004

Nucleus0.095

Rank 5 · LXL04_009503 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02727.22Cu_amine_oxidN273-172 aa

PF02728.23Cu_amine_oxidN3204-312 aa

PF01179.28Cu_amine_oxid338-742 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009503	`PF02727.22`	Cu_amine_oxidN2	73	172	2.2e-06	28.5
LXL04_009503	`PF02728.23`	Cu_amine_oxidN3	204	312	1e-25	90.6
LXL04_009503	`PF01179.28`	Cu_amine_oxid	338	742	4.3e-152	507.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L866`	Arabidopsis thaliana	Amine oxidase [copper-containing] zeta, peroxisomal	80.695%	Swiss-Prot	strong database homology

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