Gene Card
Gene overview
cDNA / CDS / Protein Sequences
966 bp · LXL04_009496|LXL04_009496|OH1004|cDNA
ATGGCGCCTCAATGCCTGGTTCCTGAAAGCTGTGCCTTCAATCACTCATTTTTGTACTTCTTGAATCCACCGGCCTCTAAATCTTTACTCATCTTCTTCCACCAGCAAGCTACACTTCTCCTTTCCCAATGGCGGTCAAGTGTGCGGAAGAGTTCGACATCCTGGTTTTCAGGTGATGTTGACAGCACACTCACCATGAGAAACGTTGAGCCCGTAAGATACAAACACTTATTTTACATTGATgacaatgatgatgattt...
966 bp · LXL04_009496|LXL04_009496|OH1004|CDS
ATGGCGCCTCAATGCCTGGTTCCTGAAAGCTGTGCCTTCAATCACTCATTTTTGTACTTCTTGAATCCACCGGCCTCTAAATCTTTACTCATCTTCTTCCACCAGCAAGCTACACTTCTCCTTTCCCAATGGCGGTCAAGTGTGCGGAAGAGTTCGACATCCTGGTTTTCAGGTGATGTTGACAGCACACTCACCATGAGAAACGTTGAGCCCGTAAGATACAAACACTTATTTTACATTGATGACAATGATGATGATTT...
Protein
Download Protein FASTA321 aa · LXL04_009496|LXL04_009496|OH1004|PROTEIN
MAPQCLVPESCAFNHSFLYFLNPPASKSLLIFFHQQATLLLSQWRSSVRKSSTSWFSGDVDSTLTMRNVEPVRYKHLFYIDDNDDDFKDVRKTTIRYFNILSLDSHECLQPTVLLKGLYYGLPDNKKPQQKSDGFPLDIRLPLKHIVSTELRVEIQKFLQNVATISSNGEREIGELIARGMEKAPPSSSAVNIDGAESKRPCLSAETPKSRPLDALFECDVSSDALLTLPVDPFLSAIVSVPASTATTLSPVKVVREKDT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009496 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009496 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr02:127462044-127469679 (-) | ||||||
| Description | Similar to TAF6: Transcription initiation factor TFIID subunit 6 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0009860 pollen tube growth Biological Process GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process GO:0000124 SAGA complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005669 transcription factor TFIID complex Cellular Component GO:0046695 SLIK (SAGA-like) complex Cellular Component GO:0003713 transcription coactivator activity Molecular Function GO:0016251 RNA polymerase II general transcription initiation factor activity Molecular Function GO:0046982 protein heterodimerization activity Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT1G04950 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9MAU3 | Arabidopsis thaliana | Transcription initiation factor TFIID subunit 6 | 30.303% | Swiss-Prot | weak database homology |