LXL04_009493 | RubberDandelionOmics

Gene overview

LXL04_009493

Reference: OH-1004 Chr: Chr02 Coordinates: 127356449-127358558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

579 bp · LXL04_009493|LXL04_009493|OH1004|cDNA

ATGGAAATGGATTTCTGGGGTTCACGAGTTCAGTCTGTAAAACACCACCACCACTTTCACACTCTCCAATCTGGCCTTCTCAACAACTCCGATAATCATGTCACAATGGATGGAGATGATGATATTAGAGCTTGGTTCCCATGTCCATTTTGTTATGTAGAAATCGAAATCCCTGCCCTTTGTTGCCATCTACAAGAAGAACATTGTTTCGACCTAAAAAACGCGGTTTGTCCGATATGTGCCGCAAATTTGGGTAAAGA...

CDS

Download CDS FASTA

579 bp · LXL04_009493|LXL04_009493|OH1004|CDS

ATGGAAATGGATTTCTGGGGTTCACGAGTTCAGTCTGTAAAACACCACCACCACTTTCACACTCTCCAATCTGGCCTTCTCAACAACTCCGATAATCATGTCACAATGGATGGAGATGATGATATTAGAGCTTGGTTCCCATGTCCATTTTGTTATGTAGAAATCGAAATCCCTGCCCTTTGTTGCCATCTACAAGAAGAACATTGTTTCGACCTAAAAAACGCGGTTTGTCCGATATGTGCCGCAAATTTGGGTAAAGA...

Protein

Download Protein FASTA

192 aa · LXL04_009493|LXL04_009493|OH1004|PROTEIN

MEMDFWGSRVQSVKHHHHFHTLQSGLLNNSDNHVTMDGDDDIRAWFPCPFCYVEIEIPALCCHLQEEHCFDLKNAVCPICAANLGKDAIAHFTSHHVHSIKRRRKSQKSGLWSNGLGLTREMTERGNMNETTPDPLSAFLYNVPFSDVQHDKHPSATFDVKSGTNEEVEVKDQEEKTHRAKFVQQLVFSTIF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009493`
TK1151 ID	TkA03G441990
OH-1004 ID	LXL04_009493
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009493

Location Chr02:127356449-127358558 (-)

Description Similar to DI19-5: Protein DEHYDRATION-INDUCED 19 homolog 5

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56280`	Protein DEHYDRATION-INDUCED 19.	No verified direct reference in this release
`At5g49230`	Involved in both red and blue light signaling.	HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses.2005 · DOI: 10.1105/tpc.104.029165
`At5g26990`	Protein DEHYDRATION-INDUCED 19 homolog 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0971100`	Protein DEHYDRATION-INDUCED 19 homolog 5.	No verified direct reference in this release
`Os05g0107900`	Protein DEHYDRATION-INDUCED 19 homolog 6.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009493 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G56280

ath:AT5G26990

ath:AT5G49230

dosa:Os01g0971100

dosa:Os05g0107900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.782

Rank 1 · LXL04_009493 · OH-1004

Cytoplasm0.297

Rank 2 · LXL04_009493 · OH-1004

Endoplasmic reticulum0.030

Rank 3 · LXL04_009493 · OH-1004

Cell membrane0.030

Rank 4 · LXL04_009493 · OH-1004

Mitochondrion0.023

Rank 5 · LXL04_009493 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05605.19zf-Di1946-96 aa

PF14571.12Di19_C126-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009493	`PF05605.19`	zf-Di19	46	96	2.5e-19	70.0
LXL04_009493	`PF14571.12`	Di19_C	126	191	3.4e-09	37.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39083`	Arabidopsis thaliana	Protein DEHYDRATION-INDUCED 19	37.158%	Swiss-Prot	moderate database homology
`Q9FJ17`	Arabidopsis thaliana	Protein DEHYDRATION-INDUCED 19 homolog 7	33.143%	Swiss-Prot	moderate database homology
`Q6NM26`	Arabidopsis thaliana	Protein DEHYDRATION-INDUCED 19 homolog 6	30.973%	Swiss-Prot	moderate database homology
`Q5JME8`	Oryza sativa subsp. japonica	Protein DEHYDRATION-INDUCED 19 homolog 5	38.012%	Swiss-Prot	moderate database homology
`Q7XBA5`	Oryza sativa subsp. japonica	Protein DEHYDRATION-INDUCED 19 homolog 6	37.079%	Swiss-Prot	moderate database homology

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