LXL04_009412 | RubberDandelionOmics

Gene overview

LXL04_009412

Reference: OH-1004 Chr: Chr02 Coordinates: 125538720-125539941 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

648 bp · LXL04_009412|LXL04_009412|OH1004|cDNA

ATGTACCCTGTACCAAACATGGCAGAGGTAGAATTGATGGCGCTGAAGAACTGGCTTAAAGAGGTTGCATATCTGCGTATCCAGATTTATGAAGCTGAGAGAGAGTTAGAACAGATACACCTTCAGTTGGCTCAGTTTAGAGGCCGAGTCTGTCCGCCATTTGTGAGTCAGATTAGAACCGATTCTGCTCACACAACATACAAGATTGATATTCAACGTGTCATGAAAGGGGAAGACTTACGGACAACTTTGATGATAAA...

CDS

Download CDS FASTA

648 bp · LXL04_009412|LXL04_009412|OH1004|CDS

ATGTACCCTGTACCAAACATGGCAGAGGTAGAATTGATGGCGCTGAAGAACTGGCTTAAAGAGGTTGCATATCTGCGTATCCAGATTTATGAAGCTGAGAGAGAGTTAGAACAGATACACCTTCAGTTGGCTCAGTTTAGAGGCCGAGTCTGTCCGCCATTTGTGAGTCAGATTAGAACCGATTCTGCTCACACAACATACAAGATTGATATTCAACGTGTCATGAAAGGGGAAGACTTACGGACAACTTTGATGATAAA...

Protein

Download Protein FASTA

215 aa · LXL04_009412|LXL04_009412|OH1004|PROTEIN

MYPVPNMAEVELMALKNWLKEVAYLRIQIYEAERELEQIHLQLAQFRGRVCPPFVSQIRTDSAHTTYKIDIQRVMKGEDLRTTLMIKNIPDMLKSEMLLVEINKHIRPGTYDFLYLPLYLKASMNLSHDKTNYGYAFINMIRSIHVAQLYKALHGKNWGLFPSRKAAALKYAKVQGKDALIEHFKYTKIKNQEKCFHPILFTNTGDQEPFPFRRD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009412`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009412

Location Chr02:125538720-125539941 (-)

Description Similar to ML1: Protein MEI2-like 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61960`	Probable RNA-binding transcriptional activator that plays a role in meiosis and vegetative growth.	No verified direct reference in this release
`At5g07290`	Probable RNA-binding protein that plays a role in meiosis and vegetative growth.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0719800`	Probable RNA-binding protein that may play a role in growth regulation.	No verified direct reference in this release
`Os02g0517531`	Probable RNA-binding protein that may play a role in growth regulation.	No verified direct reference in this release
`Os05g0102800`	Probable RNA-binding protein that may play a role in growth regulation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009412 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0045836 positive regulation of meiotic nuclear division Biological Process

GO:0045927 positive regulation of growth Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G07290

ath:AT5G61960

dosa:Os02g0517531

dosa:Os02g0719800

dosa:Os05g0102800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.502

Rank 1 · LXL04_009412 · OH-1004

Cytoplasm0.481

Rank 2 · LXL04_009412 · OH-1004

Cell membrane0.094

Rank 3 · LXL04_009412 · OH-1004

Mitochondrion0.048

Rank 4 · LXL04_009412 · OH-1004

Endoplasmic reticulum0.042

Rank 5 · LXL04_009412 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04059.19RRM_281-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009412	`PF04059.19`	RRM_2	81	185	6.3e-29	100.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W4I9`	Arabidopsis thaliana	Protein MEI2-like 1	50.336%	Swiss-Prot	moderate database homology
`Q9LYN7`	Arabidopsis thaliana	Protein MEI2-like 4	47.436%	Swiss-Prot	moderate database homology
`Q6ZI17`	Oryza sativa subsp. japonica	Protein MEI2-like 2	47.651%	Swiss-Prot	moderate database homology
`Q64M78`	Oryza sativa subsp. japonica	Protein MEI2-like 4	48.322%	Swiss-Prot	moderate database homology
`Q75M35`	Oryza sativa subsp. japonica	Protein MEI2-like 3	48.322%	Swiss-Prot	moderate database homology

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