LXL04_009401 | RubberDandelionOmics

Gene overview

LXL04_009401

Reference: OH-1004 Chr: Chr02 Coordinates: 125389216-125391161 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1272 bp · LXL04_009401|LXL04_009401|OH1004|cDNA

ATGGTGGTGGAGGAAGGAAGTCCGAAGAGCCCAGAGGCGAAGCTAGGGCTGGAAGTGGAGGACCTGTGGGACGTACAGGAACCACAGCTCTCTCCGACGGAGAAGCTTAATGCTTGTTTCGAAAGTATCCCTGTTTCGCAGTTTCCACGAACTTCCCCTTCAGAAGTAATTGAGATTAGATCGGATGCCAGTCTGGGTGAAGCTGTTCGATTACTCTCCCAAAACAAACTCCTTAGCGCACCAGTGGTAGATGTCGATGC...

CDS

Download CDS FASTA

1272 bp · LXL04_009401|LXL04_009401|OH1004|CDS

ATGGTGGTGGAGGAAGGAAGTCCGAAGAGCCCAGAGGCGAAGCTAGGGCTGGAAGTGGAGGACCTGTGGGACGTACAGGAACCACAGCTCTCTCCGACGGAGAAGCTTAATGCTTGTTTCGAAAGTATCCCTGTTTCGCAGTTTCCACGAACTTCCCCTTCAGAAGTAATTGAGATTAGATCGGATGCCAGTCTGGGTGAAGCTGTTCGATTACTCTCCCAAAACAAACTCCTTAGCGCACCAGTGGTAGATGTCGATGC...

Protein

Download Protein FASTA

423 aa · LXL04_009401|LXL04_009401|OH1004|PROTEIN

MVVEEGSPKSPEAKLGLEVEDLWDVQEPQLSPTEKLNACFESIPVSQFPRTSPSEVIEIRSDASLGEAVRLLSQNKLLSAPVVDVDAPEDSSWIDRYLGIVEFAGIVVWILQQSDKKDGLDAAEVFAKALQESTGPAVAAAANGMSSPRYRSSQPGSPKTDGNFFELLTASDFYKNTKVKDISGTFRWAPFLALQPSNSFLTMLLLLSKYRMKSVPVVDLGDRKIENIITQSAVLHMLEECADLQWFKSWGSKKLHEIGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009401`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009401

Location Chr02:125389216-125391161 (-)

Description Similar to KING1: SNF1-related protein kinase regulatory subunit gamma-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48530`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release
`At1g69800`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009401 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006110 regulation of glycolytic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0014873 response to muscle activity involved in regulation of muscle adaptation Biological Process

GO:0031669 cellular response to nutrient levels Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0042149 cellular response to glucose starvation Biological Process

GO:0045719 negative regulation of glycogen biosynthetic process Biological Process

GO:0045722 positive regulation of gluconeogenesis Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G69800

ath:AT3G48530

hsa:53632

mmu:241113

ssc:397149

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.416

Rank 1 · LXL04_009401 · OH-1004

Nucleus0.327

Rank 2 · LXL04_009401 · OH-1004

Cell membrane0.213

Rank 3 · LXL04_009401 · OH-1004

Lysosome / Vacuole0.154

Rank 4 · LXL04_009401 · OH-1004

Golgi apparatus0.096

Rank 5 · LXL04_009401 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00571.34CBS267-311 aa

PF00571.34CBS353-400 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009401	`PF00571.34`	CBS	267	311	1.2e-30	106.3
LXL04_009401	`PF00571.34`	CBS	353	400	1.2e-30	106.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LBB2`	Arabidopsis thaliana	SNF1-related protein kinase regulatory subunit gamma-1	65.947%	Swiss-Prot	strong database homology
`Q9CAR3`	Arabidopsis thaliana	SNF1-related protein kinase regulatory subunit gamma-1-like	37.750%	Swiss-Prot	moderate database homology

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Gene Card