LXL04_009378 | RubberDandelionOmics

Gene overview

LXL04_009378

Reference: OH-1004 Chr: Chr02 Coordinates: 124514579-124516549 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1971 bp · LXL04_009378|LXL04_009378|OH1004|cDNA

ATGGCGGCCGTACCTTCCCCAAACCCTCCCGTCTCCACCAACCCTCCTTCCATCTCCCACCCATTTCAGCCTCGCACCACCTTCCGACCTCGATTTACCCTTCCCGTTGCTTCCAATCCTCAAAAACGCCACCGTCTCCACATCTCCAATGTCCTATCCGATTCAAAGCCGACCACCGCCTCAACCACTACCCGTTCTCCGCTGCCTGCGGAGCCTTTTGTCTCCCGCTACGCCCCTGACCAGCCCAGAAAAGGTTCCGA...

CDS

Download CDS FASTA

1971 bp · LXL04_009378|LXL04_009378|OH1004|CDS

ATGGCGGCCGTACCTTCCCCAAACCCTCCCGTCTCCACCAACCCTCCTTCCATCTCCCACCCATTTCAGCCTCGCACCACCTTCCGACCTCGATTTACCCTTCCCGTTGCTTCCAATCCTCAAAAACGCCACCGTCTCCACATCTCCAATGTCCTATCCGATTCAAAGCCGACCACCGCCTCAACCACTACCCGTTCTCCGCTGCCTGCGGAGCCTTTTGTCTCCCGCTACGCCCCTGACCAGCCCAGAAAAGGTTCCGA...

Protein

Download Protein FASTA

656 aa · LXL04_009378|LXL04_009378|OH1004|PROTEIN

MAAVPSPNPPVSTNPPSISHPFQPRTTFRPRFTLPVASNPQKRHRLHISNVLSDSKPTTASTTTRSPLPAEPFVSRYAPDQPRKGSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSKTIRNVLPRHEQGGVFAAEGYARASGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVREAFYLASSGRPGPVLIDVPKDIQQQLVVPKWDEPMRLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009378`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009378

Location Chr02:124514579-124516549 (+)

Description Similar to ALS SURA: Acetolactate synthase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48560`	Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis.	A Mutation Causing Imidazolinone Resistance Maps to the Csr1 Locus of Arabidopsis thaliana.1990 · DOI: 10.1104/pp.92.4.1081 Expression, purification and characterization of Arabidopsis thaliana acetohydroxyacid synthase.1997 · DOI: 10.1042/bj3270161 Herbicide-resistant forms of Arabidopsis thaliana acetohydroxyacid synthase: characterization of the catalytic properties and sensitivity to inhibitors of four defined mutants.1998 · DOI: 10.1042/bj3330765

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009378 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009097 isoleucine biosynthetic process Biological Process

GO:0009099 L-valine biosynthetic process Biological Process

GO:0009635 response to herbicide Biological Process

GO:0005948 acetolactate synthase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003984 acetolactate synthase activity Molecular Function

GO:0030976 thiamine pyrophosphate binding Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

KEGG gene cross-reference

ath:AT3G48560

bna:106353715

bna:106353716

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.911

Rank 1 · LXL04_009378 · OH-1004

Mitochondrion0.095

Rank 2 · LXL04_009378 · OH-1004

Cytoplasm0.038

Rank 3 · LXL04_009378 · OH-1004

Peroxisome0.028

Rank 4 · LXL04_009378 · OH-1004

Nucleus0.020

Rank 5 · LXL04_009378 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02776.24TPP_enzyme_N84-194 aa

PF00205.29TPP_enzyme_M275-408 aa

PF02775.27TPP_enzyme_C470-625 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009378	`PF02776.24`	TPP_enzyme_N	84	194	1.1e-36	125.9
LXL04_009378	`PF00205.29`	TPP_enzyme_M	275	408	6.9e-46	156.1
LXL04_009378	`PF02775.27`	TPP_enzyme_C	470	625	3.6e-51	173.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P17597`	Arabidopsis thaliana	Acetolactate synthase, chloroplastic	78.213%	Swiss-Prot	strong database homology

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