LXL04_009355 | RubberDandelionOmics

Gene overview

LXL04_009355

Reference: OH-1004 Chr: Chr02 Coordinates: 123890538-123893066 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1011 bp · LXL04_009355|LXL04_009355|OH1004|cDNA

ATGACAGTGATTAGAGATGATTATTCTCGTTATAAGTCACCCGACAATCTCCATCTTCCTCCCTCCTTCAAAAATTCAATACACTTTGGCTTAACCATGGATCTGATCCACAAGCTCTTAAACTTTGTTCTTCCTATCGTAACCATCGTCCTCTTAGTATTGCTCTATCCCCTGGTCTTACTGTTCAGGTTCTTCAACTACCTTATCAGATTCGCTTTCCCTGAAAAACTCGCCCGAAAGGTAGCACTCATCACCGGAGC...

CDS

Download CDS FASTA

1011 bp · LXL04_009355|LXL04_009355|OH1004|CDS

ATGACAGTGATTAGAGATGATTATTCTCGTTATAAGTCACCCGACAATCTCCATCTTCCTCCCTCCTTCAAAAATTCAATACACTTTGGCTTAACCATGGATCTGATCCACAAGCTCTTAAACTTTGTTCTTCCTATCGTAACCATCGTCCTCTTAGTATTGCTCTATCCCCTGGTCTTACTGTTCAGGTTCTTCAACTACCTTATCAGATTCGCTTTCCCTGAAAAACTCGCCCGAAAGGTAGCACTCATCACCGGAGC...

Protein

Download Protein FASTA

336 aa · LXL04_009355|LXL04_009355|OH1004|PROTEIN

MTVIRDDYSRYKSPDNLHLPPSFKNSIHFGLTMDLIHKLLNFVLPIVTIVLLVLLYPLVLLFRFFNYLIRFAFPEKLARKVALITGASSGIGEYLAYEYAKSGARLALVARRKEQLEAVAGRARELGSPDVIVISADVSKVDDCKRFVDETIHHFGTLNHLVNNAGVCYIEDQRSSSDYLSLMDVNFWGSVNTTQFALPHLHNSKGKIVVVSSCAGWFAMPKLGIYCASKAALIRYFETLRVEVGSDIGITIVTPGVVES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009355`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009355

Location Chr02:123890538-123893066 (-)

Description Similar to HSD2: 11-beta-hydroxysteroid dehydrogenase-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47350`	11-beta-hydroxysteroid dehydrogenase-like 2.	No verified direct reference in this release
`At5g50690`	11-beta-hydroxysteroid dehydrogenase-like 4B.	No verified direct reference in this release
`At5g50590`	11-beta-hydroxysteroid dehydrogenase-like 4A.	No verified direct reference in this release
`At3g47360`	11-beta-hydroxysteroid dehydrogenase-like 3.	No verified direct reference in this release
`At5g50700`	Catalyzes 11-beta, 17-beta-hydroxysteroid and reduces 17- beta-ketosteroids.	Regulation of HSD1 in seeds of Arabidopsis thaliana.2009 · DOI: 10.1093/pcp/pcp092

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009355 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0070524 11-beta-hydroxysteroid dehydrogenase (NADP+) activity Molecular Function

KEGG gene cross-reference

ath:AT3G47350

ath:AT3G47360

ath:AT5G50590

ath:AT5G50600

ath:AT5G50690

ath:AT5G50700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.645

Rank 1 · LXL04_009355 · OH-1004

Cytoplasm0.147

Rank 2 · LXL04_009355 · OH-1004

Golgi apparatus0.113

Rank 3 · LXL04_009355 · OH-1004

Cell membrane0.100

Rank 4 · LXL04_009355 · OH-1004

Nucleus0.092

Rank 5 · LXL04_009355 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short80-266 aa

PF08659.17KR82-232 aa

PF13561.13adh_short_C286-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009355	`PF00106.32`	adh_short	80	266	1e-45	156.4
LXL04_009355	`PF08659.17`	KR	82	232	2.6e-10	41.2
LXL04_009355	`PF13561.13`	adh_short_C2	86	264	1.8e-29	103.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STY8`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 2	50.165%	Swiss-Prot	strong database homology
`Q9LUF2`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 4B	48.805%	Swiss-Prot	moderate database homology
`P0DKC7`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 4A	48.805%	Swiss-Prot	moderate database homology
`Q9STY7`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 3	50.165%	Swiss-Prot	strong database homology
`P0DKC6`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase 1B	49.359%	Swiss-Prot	moderate database homology

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