LXL04_009309 | RubberDandelionOmics

Gene overview

LXL04_009309

Reference: OH-1004 Chr: Chr02 Coordinates: 122410567-122412604 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

969 bp · LXL04_009309|LXL04_009309|OH1004|cDNA

ATGGCAGCTTTTTCGTACCAACAACACCAATCTCTACTCCTTGATCAGAGTGTTTTCTTTCCATACCataccaccaccaccaccaccaccaccgccacctcTTTCTCTGATCAGTTCCACCAACACCACCATGATCAAGTTTCTGAATCAAACCAGTTGCAGAGCCCAGGCTCTTCAATGTCAATGGTTCTTGATGATCAGAAAATTTCGAGTGGGAATGAGTTGTTGGCCAAGAAAAGGAAGGACAAACAAATGTGTTC...

CDS

Download CDS FASTA

969 bp · LXL04_009309|LXL04_009309|OH1004|CDS

ATGGCAGCTTTTTCGTACCAACAACACCAATCTCTACTCCTTGATCAGAGTGTTTTCTTTCCATACCATACCACCACCACCACCACCACCACCGCCACCTCTTTCTCTGATCAGTTCCACCAACACCACCATGATCAAGTTTCTGAATCAAACCAGTTGCAGAGCCCAGGCTCTTCAATGTCAATGGTTCTTGATGATCAGAAAATTTCGAGTGGGAATGAGTTGTTGGCCAAGAAAAGGAAGGACAAACAAATGTGTTC...

Protein

Download Protein FASTA

322 aa · LXL04_009309|LXL04_009309|OH1004|PROTEIN

MAAFSYQQHQSLLLDQSVFFPYHTTTTTTTTATSFSDQFHQHHHDQVSESNQLQSPGSSMSMVLDDQKISSGNELLAKKRKDKQMCSVNHAQSKDTSTKIKKQKKSNDYQEEKRKKNITKQSSCDEEGAIGYIHVRARRGQATDSHSLAERVRREKISERMKLLQAIVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMLYDFGVDLDTFMLKPDENMSSMVLPIMPIPSVQQCSTNGVATVAATFAPATD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009309`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009309

Location Chr02:122410567-122412604 (+)

Description Similar to BHLH137: Transcription factor bHLH137

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50915`	Transcription factor bHLH137.	No verified direct reference in this release
`At3g07340`	Transcription factor bHLH62.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0510500`	Transcription activator that contributes, together with LO9-177 and ILI5/BUL1, to the promotion of leaf inclination and grain size by modulating cell elongation.	No verified direct reference in this release
`Os08g0536800`	Together with BCL2, positive regulator of cell elongation at least partially through increased gibberellic acid (GA) biosynthesis.	Modulation of Rice Leaf Angle and Grain Size by Expressing OsBCL1 and OsBCL2 under the Control of OsBUL1 Promoter.2021 · DOI: 10.3390/ijms22157792
`UniProt: A2YXI4`	Together with BCL2, positive regulator of cell elongation at least partially through increased gibberellic acid (GA) biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009309 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0010372 positive regulation of gibberellin biosynthetic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

GO:0051511 negative regulation of unidimensional cell growth Biological Process

GO:0071368 cellular response to cytokinin stimulus Biological Process

GO:2000024 regulation of leaf development Biological Process

KEGG gene cross-reference

ath:AT3G07340

ath:AT5G50915

dosa:Os08g0536800

dosa:Os09g0510500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_009309 · OH-1004

Cytoplasm0.093

Rank 2 · LXL04_009309 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_009309 · OH-1004

Endoplasmic reticulum0.018

Rank 4 · LXL04_009309 · OH-1004

Plastid0.011

Rank 5 · LXL04_009309 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010.32HLH145-192 aa

PF23173.3bHLH_SAC51150-194 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009309	`PF00010.32`	HLH	145	192	8.5e-07	29.4
LXL04_009309	`PF23173.3`	bHLH_SAC51	150	194	2.6e-08	34.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93W88`	Arabidopsis thaliana	Transcription factor bHLH137	45.520%	Swiss-Prot	moderate database homology
`Q9SRT2`	Arabidopsis thaliana	Transcription factor bHLH62	62.857%	Swiss-Prot	weak database homology
`Q0J0G7`	Oryza sativa subsp. japonica	Transcription factor BC1	56.627%	Swiss-Prot	moderate database homology
`A3BV95`	Oryza sativa subsp. japonica	Basic helix-loop-helix protein 80	52.941%	Swiss-Prot	moderate database homology
`A2YXI4`	Oryza sativa subsp. indica	Basic helix-loop-helix protein 80	52.941%	Swiss-Prot	moderate database homology

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