LXL04_009300 | RubberDandelionOmics

Gene overview

LXL04_009300

Reference: OH-1004 Chr: Chr02 Coordinates: 122223310-122226450 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1386 bp · LXL04_009300|LXL04_009300|OH1004|cDNA

ATGGCCATGACAATGGCTGTTTTTTTGTTGTGTGCTTTCacggcggcggcggtggtggtgggTGGACCATCACTGGCGGAATCCGACAAGATTTTGAAATTGCCGGGTCAACCACCAGTCGGGTTTCAACAATTCTCAGGTTATGTCACCTTGGATTCGAAACGAAAAAGAGCCCTTTTTTACTACTTCGTCGAAGCTGAAATTGACCCAGTTTCAAAGCCGTTGGTTCTGTGGTTAAATGGAGGGCCTGGGTGTTCATC...

CDS

Download CDS FASTA

1386 bp · LXL04_009300|LXL04_009300|OH1004|CDS

ATGGCCATGACAATGGCTGTTTTTTTGTTGTGTGCTTTCACGGCGGCGGCGGTGGTGGTGGGTGGACCATCACTGGCGGAATCCGACAAGATTTTGAAATTGCCGGGTCAACCACCAGTCGGGTTTCAACAATTCTCAGGTTATGTCACCTTGGATTCGAAACGAAAAAGAGCCCTTTTTTACTACTTCGTCGAAGCTGAAATTGACCCAGTTTCAAAGCCGTTGGTTCTGTGGTTAAATGGAGGGCCTGGGTGTTCATC...

Protein

Download Protein FASTA

461 aa · LXL04_009300|LXL04_009300|OH1004|PROTEIN

MAMTMAVFLLCAFTAAAVVVGGPSLAESDKILKLPGQPPVGFQQFSGYVTLDSKRKRALFYYFVEAEIDPVSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGQGLVRNEYSWNTEANMLYLETPVGVGFSYDSSNSSGYEVVTDAITARDNLVFLHKWFLKFPQYQQRDLFITGESYAGHYIPQLAELMVHFNKNKKLFNLKGIALGNPVLEYATDLNSRAEYFWSHGLISDSTYKLFTSSCNYSRYVSEYYRDSVSPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009300`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009300

Location Chr02:122223310-122226450 (-)

Description Similar to SCPL45: Serine carboxypeptidase-like 45

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28110`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g33530`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g43780`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g42240`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g42230`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009300 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G28110

ath:AT1G43780

ath:AT2G33530

ath:AT5G42230

ath:AT5G42240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.534

Rank 1 · LXL04_009300 · OH-1004

Extracellular0.188

Rank 2 · LXL04_009300 · OH-1004

Cytoplasm0.093

Rank 3 · LXL04_009300 · OH-1004

Endoplasmic reticulum0.087

Rank 4 · LXL04_009300 · OH-1004

Cell membrane0.070

Rank 5 · LXL04_009300 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1035-454 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009300	`PF00450.29`	Peptidase_S10	35	454	1.2e-126	424.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y09`	Arabidopsis thaliana	Serine carboxypeptidase-like 45	78.851%	Swiss-Prot	strong database homology
`Q8VY01`	Arabidopsis thaliana	Serine carboxypeptidase-like 46	76.082%	Swiss-Prot	strong database homology
`Q9MAR8`	Arabidopsis thaliana	Serine carboxypeptidase-like 44	48.073%	Swiss-Prot	moderate database homology
`Q9FH05`	Arabidopsis thaliana	Serine carboxypeptidase-like 42	46.939%	Swiss-Prot	moderate database homology
`Q9FH06`	Arabidopsis thaliana	Serine carboxypeptidase-like 41	45.474%	Swiss-Prot	moderate database homology

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