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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_009295
Reference: OH-1004 Chr: Chr02 Coordinates: 122150453-122153056 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2604 bp · LXL04_009295|LXL04_009295|OH1004|cDNA

ATGATGAGATTATTTCCACGCAAAAACTTGACTGCAATCAACAACAGATTCGTGCTAACTTATCAATCAAGAAAATCTTCTTCAAACACCTCACGAGTCGATGAGGAAACAGTCGGAGAAATCACAGCCATTCTCAGGAACCGCAACTGGCCTCACCTCCTAAGTTCATCACCGAATCTTCTGAAATCCCTAAACCCAGATGTGATTCAATCTCTTCTTCACCAAAACCAACGCGCTGACCCTAATCGTCTTCTCCATTT...

CDS

Download CDS FASTA

2604 bp · LXL04_009295|LXL04_009295|OH1004|CDS

ATGATGAGATTATTTCCACGCAAAAACTTGACTGCAATCAACAACAGATTCGTGCTAACTTATCAATCAAGAAAATCTTCTTCAAACACCTCACGAGTCGATGAGGAAACAGTCGGAGAAATCACAGCCATTCTCAGGAACCGCAACTGGCCTCACCTCCTAAGTTCATCACCGAATCTTCTGAAATCCCTAAACCCAGATGTGATTCAATCTCTTCTTCACCAAAACCAACGCGCTGACCCTAATCGTCTTCTCCATTT...

Protein

Download Protein FASTA

867 aa · LXL04_009295|LXL04_009295|OH1004|PROTEIN

MMRLFPRKNLTAINNRFVLTYQSRKSSSNTSRVDEETVGEITAILRNRNWPHLLSSSPNLLKSLNPDVIQSLLHQNQRADPNRLLHFFNWSIHQIGTPQNLKSFLILATILCNSNQPRPASILLGQMIETRKPVSDIMESVASFCVEAEGLKFGSMLYGMIIDAYKNKRMFNEAVSVVVGINSKKHFPDSSCVNSTMTILSKYHKIELARKVYDKMRELDIIPDVYIYTNFIGALCKDGNMSEAKRVFIEMGEKGCNPSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_009295
TK1151 IDTkA03G416180
OH-1004 IDLXL04_009295
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.300
Protein coverage (%)TK1151 42.032 / OH-1004 27.682
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_009295
LocationChr02:122150453-122153056 (-)
DescriptionSimilar to At5g61990: Pentatricopeptide repeat-containing protein At5g61990, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g61990 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial. No verified direct reference in this release
At5g59900 Putative pentatricopeptide repeat-containing protein At5g59900. No verified direct reference in this release
At1g62910 Pentatricopeptide repeat-containing protein At1g62910. No verified direct reference in this release
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At1g63080 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009295 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G59900
ath:AT5G61990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.818
Rank 1 · LXL04_009295 · OH-1004
Plastid0.102
Rank 2 · LXL04_009295 · OH-1004
Nucleus0.059
Rank 3 · LXL04_009295 · OH-1004
Cytoplasm0.041
Rank 4 · LXL04_009295 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_009295 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N168-319 aa
PF13041.13PPR_2188-237 aa
PF17177.11PPR_long192-301 aa
PF13812.13PPR_3212-268 aa
PF12854.14PPR_1221-251 aa
PF13041.13PPR_2223-272 aa
PF01535.27PPR227-256 aa
PF12854.14PPR_1254-286 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_009295PF29070.1MSC6_N1683191.9e-40139.9
LXL04_009295PF13041.13PPR_21882371.2e-199647.2
LXL04_009295PF17177.11PPR_long1923013.4e-47161.3
LXL04_009295PF13812.13PPR_32122682.4e-88290.9
LXL04_009295PF12854.14PPR_12212516.4e-160519.2
LXL04_009295PF13041.13PPR_22232721.2e-199647.2
LXL04_009295PF01535.27PPR2272565e-138440.8
LXL04_009295PF12854.14PPR_12542866.4e-160519.2
LXL04_009295PF13041.13PPR_22583071.2e-199647.2
LXL04_009295PF23276.3TPR_242603511.5e-46158.3
LXL04_009295PF01535.27PPR2612885e-138440.8
LXL04_009295PF13812.13PPR_32823382.4e-88290.9
LXL04_009295PF12854.14PPR_12903226.4e-160519.2
LXL04_009295PF01535.27PPR2963265e-138440.8
LXL04_009295PF13041.13PPR_22973421.2e-199647.2
LXL04_009295PF23276.3TPR_243154071.5e-46158.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FIT7Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g61990, mitochondrial32.421%Swiss-Protmoderate database homology
Q9FJE6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At5g5990030.430%Swiss-Protmoderate database homology
Q9LQ16Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6291030.990%Swiss-Protmoderate database homology
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458029.672%Swiss-Protweak database homology
Q9CAN5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63080, mitochondrial31.083%Swiss-Protmoderate database homology

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