LXL04_009185 | RubberDandelionOmics

Gene overview

LXL04_009185

Reference: OH-1004 Chr: Chr02 Coordinates: 119884120-119887666 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · LXL04_009185|LXL04_009185|OH1004|cDNA

ATGGGTGGAGCATGTTCTAGAAAACAAGGCCAACATATAAATGAAGATGGTGCATATAGTCGGCTTTCTAGAAGATATTCCAGAAATGGAAGCTCAAAGTGGCCGGGAACCTCTTTTTATCGAACAACTATTGATGATAAATCAAGAATAGCATTTTGTCCATCTCTCATGGAATTGTGCACTTATATAGTGTGTGAAAAAATTGATGAATATGAGAGCTTGTGTATGCTTCCAAAGGATATTAGCCAGCAAATATTTGA...

CDS

Download CDS FASTA

1728 bp · LXL04_009185|LXL04_009185|OH1004|CDS

ATGGGTGGAGCATGTTCTAGAAAACAAGGCCAACATATAAATGAAGATGGTGCATATAGTCGGCTTTCTAGAAGATATTCCAGAAATGGAAGCTCAAAGTGGCCGGGAACCTCTTTTTATCGAACAACTATTGATGATAAATCAAGAATAGCATTTTGTCCATCTCTCATGGAATTGTGCACTTATATAGTGTGTGAAAAAATTGATGAATATGAGAGCTTGTGTATGCTTCCAAAGGATATTAGCCAGCAAATATTTGA...

Protein

Download Protein FASTA

575 aa · LXL04_009185|LXL04_009185|OH1004|PROTEIN

MGGACSRKQGQHINEDGAYSRLSRRYSRNGSSKWPGTSFYRTTIDDKSRIAFCPSLMELCTYIVCEKIDEYESLCMLPKDISQQIFDELVYSRRLNATYLEAFRGCALEDIDLGEYPGVDDSWMEVISSQGSSLLTSDFSGSNLTDYALIHIKDCDNIQDLNFNFCAQISDTGLDHISGLSNLTTLSLKRNNSITADGMIALSNLVNLSKLDLERCPLIHGGLVHLKGLSKLEVLNINCCNCITDDDMEPLSELKNLKEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009185`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_009185`
Location	Chr02:119884120-119887666 (+)
Description	Similar to FBXL14: F-box/LRR-repeat protein 14
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009185` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference	hsa:144699 mmu:101358 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.499

Rank 1 · LXL04_009185 · OH-1004

Nucleus0.460

Rank 2 · LXL04_009185 · OH-1004

Mitochondrion0.066

Rank 3 · LXL04_009185 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_009185 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_009185 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25372.2LRR_FBXL15140-217 aa

PF13855.13LRR_8169-218 aa

PF23598.2LRR_14176-359 aa

PF13855.13LRR_8256-315 aa

PF25372.2LRR_FBXL15291-371 aa

PF13855.13LRR_8308-363 aa

PF23598.2LRR_14345-478 aa

PF29594.1LRR_SKP2383-552 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009185	`PF25372.2`	LRR_FBXL15	140	217	2e-26	93.2
LXL04_009185	`PF13855.13`	LRR_8	169	218	1.9e-25	89.1
LXL04_009185	`PF23598.2`	LRR_14	176	359	2.2e-18	66.8
LXL04_009185	`PF13855.13`	LRR_8	256	315	1.9e-25	89.1
LXL04_009185	`PF25372.2`	LRR_FBXL15	291	371	2e-26	93.2
LXL04_009185	`PF13855.13`	LRR_8	308	363	1.9e-25	89.1
LXL04_009185	`PF23598.2`	LRR_14	345	478	2.2e-18	66.8
LXL04_009185	`PF29594.1`	LRR_SKP2	383	552	6.6e-12	46.0
LXL04_009185	`PF25372.2`	LRR_FBXL15	387	443	2e-26	93.2
LXL04_009185	`PF23598.2`	LRR_14	456	564	2.2e-18	66.8
LXL04_009185	`PF13855.13`	LRR_8	471	531	1.9e-25	89.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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