LXL04_009121 | RubberDandelionOmics

Gene overview

LXL04_009121

Reference: OH-1004 Chr: Chr02 Coordinates: 118251378-118252580 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1008 bp · LXL04_009121|LXL04_009121|OH1004|cDNA

ATGATAAAGTTGCAGAAATCAGATCACAAAACATTGTACATGTCTTGTTTAAAGCAGGTGAAGGAGTTCTCCACCATGGATCTCAATGATCTCAACAAAGTCTGGGAAGTGAAACCTCTAAAAAAGCCCCGTGAAGATGAGGCAAAAGAAATCCTCGAAAAAGTAGCAAAGCAAGTTCAACCCATCATGCGAAAGCACAATTGGAAAGTCAACATCCTCTCTGAATTCTGCCCTCCAAATCCCGCTCTTCTTGGCCTAAA...

CDS

Download CDS FASTA

1008 bp · LXL04_009121|LXL04_009121|OH1004|CDS

ATGATAAAGTTGCAGAAATCAGATCACAAAACATTGTACATGTCTTGTTTAAAGCAGGTGAAGGAGTTCTCCACCATGGATCTCAATGATCTCAACAAAGTCTGGGAAGTGAAACCTCTAAAAAAGCCCCGTGAAGATGAGGCAAAAGAAATCCTCGAAAAAGTAGCAAAGCAAGTTCAACCCATCATGCGAAAGCACAATTGGAAAGTCAACATCCTCTCTGAATTCTGCCCTCCAAATCCCGCTCTTCTTGGCCTAAA...

Protein

Download Protein FASTA

335 aa · LXL04_009121|LXL04_009121|OH1004|PROTEIN

MIKLQKSDHKTLYMSCLKQVKEFSTMDLNDLNKVWEVKPLKKPREDEAKEILEKVAKQVQPIMRKHNWKVNILSEFCPPNPALLGLNINGGAEVKLRLRRQNNEWDFFPFEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGITGTGRGFDLPGRRLGGYNRPQTSSSLRQKALSAAQNRAQMGIVMPAGPHRLGGDSSLRTALSPIQAAAMAAERRLHDDLWCASKSSQSLELSGSSEPSVSISSSEESL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009121`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_009121`
Location	Chr02:118251378-118252580 (-)
Description	Similar to WSS1: DNA-dependent metalloprotease WSS1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009121` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006508 proteolysis Biological Process GO:0016925 protein sumoylation Biological Process GO:0019985 translesion synthesis Biological Process GO:0036205 histone catabolic process Biological Process GO:0106300 protein-DNA covalent cross-linking repair Biological Process GO:1990414 replication-born double-strand break repair via sister chromatid exchange Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005829 cytosol Cellular Component GO:0003690 double-stranded DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function
KEGG gene cross-reference	sce:YHR134W spo:2538751 spo:2543468 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.708

Rank 1 · LXL04_009121 · OH-1004

Cytoplasm0.364

Rank 2 · LXL04_009121 · OH-1004

Cell membrane0.048

Rank 3 · LXL04_009121 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_009121 · OH-1004

Mitochondrion0.035

Rank 5 · LXL04_009121 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08325.17WLM33-227 aa

PF00641.24Zn_ribbon_RanBP263-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009121	`PF08325.17`	WLM	33	227	1.6e-61	208.4
LXL04_009121	`PF00641.24`	Zn_ribbon_RanBP	263	287	3e-09	36.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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