LXL04_009094 | RubberDandelionOmics

Gene overview

LXL04_009094

Reference: OH-1004 Chr: Chr02 Coordinates: 117865414-117868416 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1383 bp · LXL04_009094|LXL04_009094|OH1004|cDNA

ATGATCGACGTGAGGACGATGGTGAAAGAGAGggggaagaagaagatggtggTGTCGCTGCTAATCCGTGGGATGATTCGGGGATCAACAACTGacggttcaaatgagaacaaattaTCAAAACAAGAACGCGAGAACAATCAGCCCTTAGCCCAACAAGAAAGTGAACAACCACCTACCGGAGTCACCGCACCACCGTCTGAACCAACGCACCACCGCGGCTGGTACCGTCGGTGCCGGAACCACTGTCGCCGGAACCA...

CDS

Download CDS FASTA

1383 bp · LXL04_009094|LXL04_009094|OH1004|CDS

ATGATCGACGTGAGGACGATGGTGAAAGAGAGGGGGAAGAAGAAGATGGTGGTGTCGCTGCTAATCCGTGGGATGATTCGGGGATCAACAACTGACGGTTCAAATGAGAACAAATTATCAAAACAAGAACGCGAGAACAATCAGCCCTTAGCCCAACAAGAAAGTGAACAACCACCTACCGGAGTCACCGCACCACCGTCTGAACCAACGCACCACCGCGGCTGGTACCGTCGGTGCCGGAACCACTGTCGCCGGAACCA...

Protein

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460 aa · LXL04_009094|LXL04_009094|OH1004|PROTEIN

MIDVRTMVKERGKKKMVVSLLIRGMIRGSTTDGSNENKLSKQERENNQPLAQQESEQPPTGVTAPPSEPTHHRGWYRRCRNHCRRNHQIDASSLWRYMFSSMLGSSATTEVILDGGKNNALQLMQAEIQLISPSVPARVMKFFRFSRQQAEGVWAVVDLSFDVFDKMSRRTMMKCAFAETSERVILPRGQHERKKEIDFSRDVCVSYLGVFLVRLFITAFLDVALFFLWLFVGLGVVICSFVLLSKSFCLLVVIQVPGLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009094`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009094

Location Chr02:117865414-117868416 (-)

Description Similar to HDG1: Homeobox-leucine zipper protein HDG1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61150`	Probable transcription factor (By similarity).	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis.2011 · DOI: 10.1105/tpc.111.088625 Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211
`At4g00730`	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root.	ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis.1999 · DOI: 10.1105/tpc.11.7.1217

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0569100`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A3BPF2`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2YR02`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009094 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0030154 cell differentiation Biological Process

GO:0043481 anthocyanin accumulation in tissues in response to UV light Biological Process

GO:0048364 root development Biological Process

GO:0048497 maintenance of floral organ identity Biological Process

GO:0048765 root hair cell differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G61150

ath:AT4G00730

dosa:Os04g0569100

dosa:Os08g0136100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.378

Rank 1 · LXL04_009094 · OH-1004

Nucleus0.370

Rank 2 · LXL04_009094 · OH-1004

Cell membrane0.172

Rank 3 · LXL04_009094 · OH-1004

Endoplasmic reticulum0.131

Rank 4 · LXL04_009094 · OH-1004

Mitochondrion0.106

Rank 5 · LXL04_009094 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01852.26START94-167 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009094	`PF01852.26`	START	94	167	1e-05	25.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2E8`	Arabidopsis thaliana	Homeobox-leucine zipper protein HDG1	56.164%	Swiss-Prot	weak database homology
`Q0WV12`	Arabidopsis thaliana	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	51.351%	Swiss-Prot	weak database homology
`Q7Y0V9`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein ROC4	51.282%	Swiss-Prot	weak database homology
`A3BPF2`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein ROC7	47.887%	Swiss-Prot	weak database homology
`A2YR02`	Oryza sativa subsp. indica	Homeobox-leucine zipper protein ROC7	47.887%	Swiss-Prot	weak database homology

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