LXL04_009038 | RubberDandelionOmics

Gene overview

LXL04_009038

Reference: OH-1004 Chr: Chr02 Coordinates: 116695043-116696498 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

966 bp · LXL04_009038|LXL04_009038|OH1004|cDNA

ATGACGGTGGTCGCCGGTTGCTCCACCACGTGTGCTCTTCCCCGACCAATATCAACGGCGTCTCCCCGGATAACCTACGGTCAGGAATCTTTCCGATTACACTGCTTAAAAGATAAGCAGCCTTTTAATCGCTCGTCATCACTTCTTTTTGAAGGAAAGCTTGTTCCTCTTGTCCAAAACTTCAGAACCCAAGGATTTTCGCCTGCCATAAATGCGATGCATATGAAGCTAGATCAATATGCACCTTCAACAACCAATGA...

CDS

Download CDS FASTA

966 bp · LXL04_009038|LXL04_009038|OH1004|CDS

ATGACGGTGGTCGCCGGTTGCTCCACCACGTGTGCTCTTCCCCGACCAATATCAACGGCGTCTCCCCGGATAACCTACGGTCAGGAATCTTTCCGATTACACTGCTTAAAAGATAAGCAGCCTTTTAATCGCTCGTCATCACTTCTTTTTGAAGGAAAGCTTGTTCCTCTTGTCCAAAACTTCAGAACCCAAGGATTTTCGCCTGCCATAAATGCGATGCATATGAAGCTAGATCAATATGCACCTTCAACAACCAATGA...

Protein

Download Protein FASTA

321 aa · LXL04_009038|LXL04_009038|OH1004|PROTEIN

MTVVAGCSTTCALPRPISTASPRITYGQESFRLHCLKDKQPFNRSSSLLFEGKLVPLVQNFRTQGFSPAINAMHMKLDQYAPSTTNEIDKPFPLALNQAMGFVGISNALLLATPLEAMADTSDATQSIFNMNMPVLLLVALIGATVGGLVARQRKAELERLNEQLRQINTALKRQAKIESYAPALSYAPAAIKVPENEVFVDPRKQELISHLKNGKNFLRNQNPENAFFEFKTALDLAQNIKDPIEEKKAARGLGASLQR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009038`
TK1151 ID	TkA03G394260
OH-1004 ID	LXL04_009038
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009038

Location Chr02:116695043-116696498 (-)

Description Similar to FLU: Protein FLUORESCENT IN BLUE LIGHT, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14110`	Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009038 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007346 regulation of mitotic cell cycle Biological Process

GO:0015995 chlorophyll biosynthetic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0051301 cell division Biological Process

GO:0000922 spindle pole Cellular Component

GO:0005813 centrosome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT3G14110

hsa:23331

mmu:209683

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975

Rank 1 · LXL04_009038 · OH-1004

Mitochondrion0.033

Rank 2 · LXL04_009038 · OH-1004

Nucleus0.024

Rank 3 · LXL04_009038 · OH-1004

Cytoplasm0.018

Rank 4 · LXL04_009038 · OH-1004

Cell membrane0.010

Rank 5 · LXL04_009038 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13424.13TPR_12251-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009038	`PF13424.13`	TPR_12	251	318	8.5e-13	49.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q940U6`	Arabidopsis thaliana	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic	71.818%	Swiss-Prot	moderate database homology

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