LXL04_009026 | RubberDandelionOmics

Gene overview

LXL04_009026

Reference: OH-1004 Chr: Chr02 Coordinates: 116434844-116436003 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

810 bp · LXL04_009026|LXL04_009026|OH1004|cDNA

ATGAAGTTCTTCAGTTGGATGCAAAGTAAATTCAGTGGTGGACAAGATCATAGAAACTCCAATACAACCACTTCTGCTACTCATCACGTGAAACAAGAAGCTCGGAAAGAAGAATTAAACGACTGGCCACATGGGCTTCTGGCAATAGGAACGTTTGGAAACAATGAAGTTACAACCGAAAATGAAGAGATTCAAGAAAATACACAAGGCACAGAATCATCGTCTCCAGATCTATCCGACTTCACACCTGAAGAGATCGG...

CDS

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810 bp · LXL04_009026|LXL04_009026|OH1004|CDS

ATGAAGTTCTTCAGTTGGATGCAAAGTAAATTCAGTGGTGGACAAGATCATAGAAACTCCAATACAACCACTTCTGCTACTCATCACGTGAAACAAGAAGCTCGGAAAGAAGAATTAAACGACTGGCCACATGGGCTTCTGGCAATAGGAACGTTTGGAAACAATGAAGTTACAACCGAAAATGAAGAGATTCAAGAAAATACACAAGGCACAGAATCATCGTCTCCAGATCTATCCGACTTCACACCTGAAGAGATCGG...

Protein

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269 aa · LXL04_009026|LXL04_009026|OH1004|PROTEIN

MKFFSWMQSKFSGGQDHRNSNTTTSATHHVKQEARKEELNDWPHGLLAIGTFGNNEVTTENEEIQENTQGTESSSPDLSDFTPEEIGKLQKELTKLLSKKPAANKQGEITADLPLDRFLNCPSSLEVDRRLSTSVITNSGDKDEDIDRTIRVILGRCKDICTDNSKKAIGKKSISFLLKKMFVCSSGFPPMPSLQERLPESRMERLLRAMLKNKINPQNSSRASSARKLIENRQSPRKGKEKVKEIEEDEANDGAKWVKT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009026`
TK1151 ID	TkA03G393840
OH-1004 ID	LXL04_009026
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009026

Location Chr02:116434844-116436003 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72490`	Involved in the regulation of root gravitropism.	DRO1 influences root system architecture in Arabidopsis and Prunus species.2017 · DOI: 10.1111/tpj.13470 The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots.2017 · DOI: 10.1105/tpc.16.00575 LAZY Genes Mediate the Effects of Gravity on Auxin Gradients and Plant Architecture.2017 · DOI: 10.1104/pp.17.00942 AtDRO1 is nuclear localized in root tips under native conditions and impacts auxin localization.2020 · DOI: 10.1007/s11103-020-00984-2
`At1g17400`	Involved in the regulation of root gravitropism.	The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots.2017 · DOI: 10.1105/tpc.16.00575 LAZY Genes Mediate the Effects of Gravity on Auxin Gradients and Plant Architecture.2017 · DOI: 10.1104/pp.17.00942

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0439800`	Involved in the control of root growth angle.	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.2013 · DOI: 10.1038/ng.2725

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009026 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009630 gravitropism Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0040008 regulation of growth Biological Process

GO:0080181 lateral root branching Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009501 amyloplast Cellular Component

KEGG gene cross-reference

ath:AT1G17400

ath:AT1G72490

dosa:Os09g0439800

mtr:25500557

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.494

Rank 1 · LXL04_009026 · OH-1004

Nucleus0.371

Rank 2 · LXL04_009026 · OH-1004

Cytoplasm0.328

Rank 3 · LXL04_009026 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_009026 · OH-1004

Plastid0.041

Rank 5 · LXL04_009026 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28425.1LAZY_C7-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009026	`PF28425.1`	LAZY_C	7	269	4.7e-109	364.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5XVG3`	Arabidopsis thaliana	Protein LAZY 4	51.333%	Swiss-Prot	strong database homology
`Q58G53`	Arabidopsis thaliana	Protein LAZY 2	48.658%	Swiss-Prot	moderate database homology
`Q69P88`	Oryza sativa subsp. japonica	Protein DEEPER ROOTING 1	36.429%	Swiss-Prot	moderate database homology

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