LXL04_009024 | RubberDandelionOmics

Gene overview

LXL04_009024

Reference: OH-1004 Chr: Chr02 Coordinates: 116338893-116342660 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2446 bp · LXL04_009024|LXL04_009024|OH1004|cDNA

TCAGTCCAAAAGGAGAGACCTTTTGAGCTTTGAACATGACCCCCAATATAGCAAAGCGTCGCACCTGCCATTCTTTTATATTCTCTCTCACACTCACTCTCACAGACACTGATCACACTACTACTACTGTCAATTATTACCAGCTATTTCCGACGACCTTCCGATGGCCGTCGATGAGTTTTCTAGATCAGTTCAAATGGGACTACAGCTATCTAAACGGATAAGTTACGGAAAAGACAAGGGTTCCATGATTGTTCCGA...

CDS

Download CDS FASTA

2283 bp · LXL04_009024|LXL04_009024|OH1004|CDS

ATGGCCGTCGATGAGTTTTCTAGATCAGTTCAAATGGGACTACAGCTATCTAAACGGATAAGTTACGGAAAAGACAAGGGTTCCATGATTGTTCCGAAGGTGCCGTCCATGAAGAAGTCGTTGTCGTCATGTTCGTCGTCCTCGTCGTTGCGGTTACCGGAGAATCATCGTCCGACTGCGCCGATGGTTTATGCTGTTATTGTTGATCCTTCAGTCGTCGATAATCCGGATATCTGTAGCTACCAGCCGTATGTGTATGG...

Protein

Download Protein FASTA

760 aa · LXL04_009024|LXL04_009024|OH1004|PROTEIN

MAVDEFSRSVQMGLQLSKRISYGKDKGSMIVPKVPSMKKSLSSCSSSSSLRLPENHRPTAPMVYAVIVDPSVVDNPDICSYQPYVYGHCDPPALVPLQMHGIAMEVECCLDTAFVTVTGTWRLHCVTSTACCDCRIAIPMGEQGSVLGIEVETPRRSYSTQFITPQNEKDAEKVTNTNNGFLMKGNTYMFKISQVDGGSQIHVTIKWSQKLLYQDHEFCLSVPFTFPDCVLPVVKGTSNKEKVILNVNSGTDTEIICNYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009024`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_009024`
Location	Chr02:116338893-116342660 (+)
Description	Similar to ITIH1: Inter-alpha-trypsin inhibitor heavy chain H1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009024` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0030198 extracellular matrix organization Biological Process GO:0030212 hyaluronan metabolic process Biological Process GO:0034097 response to cytokine Biological Process GO:0005576 extracellular region Cellular Component GO:0005615 extracellular space Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0031012 extracellular matrix Cellular Component GO:0004867 serine-type endopeptidase inhibitor activity Molecular Function GO:0005540 hyaluronic acid binding Molecular Function GO:0030246 carbohydrate binding Molecular Function
KEGG gene cross-reference	hsa:127731 mmu:16424 mmu:16427 mmu:75718 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.367

Rank 1 · LXL04_009024 · OH-1004

Cytoplasm0.288

Rank 2 · LXL04_009024 · OH-1004

Nucleus0.182

Rank 3 · LXL04_009024 · OH-1004

Endoplasmic reticulum0.180

Rank 4 · LXL04_009024 · OH-1004

Lysosome / Vacuole0.100

Rank 5 · LXL04_009024 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13768.13VWA_3337-494 aa

PF00092.35VWA338-491 aa

PF13519.13VWA_2338-443 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009024	`PF13768.13`	VWA_3	337	494	1.8e-10	41.8
LXL04_009024	`PF00092.35`	VWA	338	491	4e-10	40.9
LXL04_009024	`PF13519.13`	VWA_2	338	443	5.4e-08	34.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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