LXL04_008875 | RubberDandelionOmics

Gene overview

LXL04_008875

Reference: OH-1004 Chr: Chr02 Coordinates: 110920483-110921051 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

399 bp · LXL04_008875|LXL04_008875|OH1004|cDNA

ATGTCGACATTCGAGAAGAAAACAGTGTTGTCAGTGGATCTACTTGGTTTAAAGTGCAGGAAGAAGGTAATGATGTTGATTTCATCCATAGAAGGAATAAACTCAATAATTCTTGACCCTTCAAAGAACACGGCAACAATAATTGGCGAGGCTGATCCTGTGTCCATAGTCAGAAAGGTCAGGAAGTTTCGAAAATCGGCACACATAATAAGCGTGGGACCTGccaaagaagaaaagaaagaggaGAAAAAAGATGATAA...

CDS

Download CDS FASTA

399 bp · LXL04_008875|LXL04_008875|OH1004|CDS

ATGTCGACATTCGAGAAGAAAACAGTGTTGTCAGTGGATCTACTTGGTTTAAAGTGCAGGAAGAAGGTAATGATGTTGATTTCATCCATAGAAGGAATAAACTCAATAATTCTTGACCCTTCAAAGAACACGGCAACAATAATTGGCGAGGCTGATCCTGTGTCCATAGTCAGAAAGGTCAGGAAGTTTCGAAAATCGGCACACATAATAAGCGTGGGACCTGCCAAAGAAGAAAAGAAAGAGGAGAAAAAAGATGATAA...

Protein

Download Protein FASTA

132 aa · LXL04_008875|LXL04_008875|OH1004|PROTEIN

MSTFEKKTVLSVDLLGLKCRKKVMMLISSIEGINSIILDPSKNTATIIGEADPVSIVRKVRKFRKSAHIISVGPAKEEKKEEKKDDKKEEKNEKKDESKDALARTTYTPRTCHRCDVWYAVNQDCILPCQVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008875`
TK1151 ID	TkA03G318240
OH-1004 ID	LXL04_008875
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008875

Location Chr02:110920483-110921051 (-)

Description Similar to HIPP39: Heavy metal-associated isoprenylated plant protein 39

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01490`	Probable heavy-metal-binding protein.	No verified direct reference in this release
`At3g05920`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g26690`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008875 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G01490

ath:AT3G05920

ath:AT5G26690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590

Rank 1 · LXL04_008875 · OH-1004

Nucleus0.308

Rank 2 · LXL04_008875 · OH-1004

Cell membrane0.289

Rank 3 · LXL04_008875 · OH-1004

Mitochondrion0.046

Rank 4 · LXL04_008875 · OH-1004

Endoplasmic reticulum0.034

Rank 5 · LXL04_008875 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403.33HMA17-63 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008875	`PF00403.33`	HMA	17	63	2e-07	32.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O03982`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 39	41.096%	Swiss-Prot	moderate database homology
`Q9SFF7`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 43	36.765%	Swiss-Prot	moderate database homology
`Q8GWS3`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 2	35.294%	Swiss-Prot	moderate database homology

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