LXL04_008785 | RubberDandelionOmics

Gene overview

LXL04_008785

Reference: OH-1004 Chr: Chr02 Coordinates: 108856824-108858615 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

888 bp · LXL04_008785|LXL04_008785|OH1004|cDNA

ATGCTGCCTTCAACCTGGAGCAGATCGTGTGGTACAGCACCGACTCGTCGGAATCCGAGCCTGAATCGGAGTCACAGTAGGATCATCAGGGACTTCAATTTGTTCCCAGAACACGATATCAACATTGTTGAGGACGATGCTGGTTTACGATCTTCGAGTGTCCAGCAGAAGACGATAGTTGAGAGGCGTTTGAAATTTCCCAATTTCGCCTATCCGAACGGTGCATCTGTTGCTGATTTAGGTCATCATGCTGGTTACTA...

CDS

Download CDS FASTA

888 bp · LXL04_008785|LXL04_008785|OH1004|CDS

ATGCTGCCTTCAACCTGGAGCAGATCGTGTGGTACAGCACCGACTCGTCGGAATCCGAGCCTGAATCGGAGTCACAGTAGGATCATCAGGGACTTCAATTTGTTCCCAGAACACGATATCAACATTGTTGAGGACGATGCTGGTTTACGATCTTCGAGTGTCCAGCAGAAGACGATAGTTGAGAGGCGTTTGAAATTTCCCAATTTCGCCTATCCGAACGGTGCATCTGTTGCTGATTTAGGTCATCATGCTGGTTACTA...

Protein

Download Protein FASTA

295 aa · LXL04_008785|LXL04_008785|OH1004|PROTEIN

MLPSTWSRSCGTAPTRRNPSLNRSHSRIIRDFNLFPEHDINIVEDDAGLRSSSVQQKTIVERRLKFPNFAYPNGASVADLGHHAGYYQIEHFHAARYVIAISKYLFSVVFEFGGWDFRSATTDPPSILLHLQIGTSALRAPSSSSNRRRQILLHLQVGDDRPYIFARRQFKSTIELLLHLQFASRRHSAFVLDSYSSKQLEIQPVSISSPDCGVKNFMALKMVFLNERRGQFGLFLFQIMIGQIFESMRKRSFKAIKKMM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008785`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008785

Location Chr02:108856824-108858615 (+)

Description Similar to SCPL49: Serine carboxypeptidase-like 49

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10410`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g22980`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g45010`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008785 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10410

ath:AT3G45010

ath:AT5G22980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.450

Rank 1 · LXL04_008785 · OH-1004

Cytoplasm0.388

Rank 2 · LXL04_008785 · OH-1004

Cell membrane0.110

Rank 3 · LXL04_008785 · OH-1004

Mitochondrion0.096

Rank 4 · LXL04_008785 · OH-1004

Endoplasmic reticulum0.091

Rank 5 · LXL04_008785 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P32826`	Arabidopsis thaliana	Serine carboxypeptidase-like 49	46.032%	Swiss-Prot	weak database homology
`Q9FFB0`	Arabidopsis thaliana	Serine carboxypeptidase-like 47	31.298%	Swiss-Prot	weak database homology
`Q56WF8`	Arabidopsis thaliana	Serine carboxypeptidase-like 48	30.986%	Swiss-Prot	weak database homology

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