LXL04_008724 | RubberDandelionOmics

Gene overview

LXL04_008724

Reference: OH-1004 Chr: Chr02 Coordinates: 106970950-106972575 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · LXL04_008724|LXL04_008724|OH1004|cDNA

ATGGCAACAAAATCGGAGAGGTTTTCCTCAGATTTTGTGATGGGAGGTGCAGCAGCGATAGTATCAAAAAGCGCAGCAGCACCAATTGAAAGAGTGAAGCTTTTACTGCAAAATCAAGGCGAGTTATTAAAAAGGGGTCAACTCACAAGACCATATTCCGGAGTTGGTCAATGCTTCAAAAGGGTCTTCAAAGAAGAAGGGTTCTTGTCATTTTGGAGGGGTAATCAAGTCAATGTCATCCGCTATTTCCCAACTCAGGC...

CDS

Download CDS FASTA

921 bp · LXL04_008724|LXL04_008724|OH1004|CDS

ATGGCAACAAAATCGGAGAGGTTTTCCTCAGATTTTGTGATGGGAGGTGCAGCAGCGATAGTATCAAAAAGCGCAGCAGCACCAATTGAAAGAGTGAAGCTTTTACTGCAAAATCAAGGCGAGTTATTAAAAAGGGGTCAACTCACAAGACCATATTCCGGAGTTGGTCAATGCTTCAAAAGGGTCTTCAAAGAAGAAGGGTTCTTGTCATTTTGGAGGGGTAATCAAGTCAATGTCATCCGCTATTTCCCAACTCAGGC...

Protein

Download Protein FASTA

306 aa · LXL04_008724|LXL04_008724|OH1004|PROTEIN

MATKSERFSSDFVMGGAAAIVSKSAAAPIERVKLLLQNQGELLKRGQLTRPYSGVGQCFKRVFKEEGFLSFWRGNQVNVIRYFPTQAFNFAFKGYFKSVFGRSKERDGYMKWFIGNVASGSCAGATTSLFLYHLDYVRTRLATNQKSQFSGIFDVYRKTLETDGIRGLYRGFGISIVGITLYRGMYFGLYDSLKPIVLIGSFQDSFIASFFLGWSVTTFSGVCAYPFDTVRRRMMLTSGQPSNSKYRHAIHAIHEIIRLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008724`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008724

Location Chr02:106970950-106972575 (-)

Description Similar to ER-ANT1: ADP,ATP carrier protein ER-ANT1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17400`	ADP:ATP antiporter that catalyzes the exchange of ADP and ATP across the endoplasmic reticulum membrane.	Identification of a novel adenine nucleotide transporter in the endoplasmic reticulum of Arabidopsis.2008 · DOI: 10.1105/tpc.107.057554

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008724 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0046902 regulation of mitochondrial membrane permeability Biological Process

GO:0048316 seed development Biological Process

GO:0048364 root development Biological Process

GO:0048367 shoot system development Biological Process

GO:0051503 adenine nucleotide transport Biological Process

GO:0140021 mitochondrial ADP transmembrane transport Biological Process

GO:1990544 mitochondrial ATP transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005757 mitochondrial permeability transition pore complex Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005471 ATP:ADP antiporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G17400

cre:CHLRE_09g386650v5

mtm:MYCTH_2316753

vda:VDAG_07535

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.886

Rank 1 · LXL04_008724 · OH-1004

Cytoplasm0.029

Rank 2 · LXL04_008724 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_008724 · OH-1004

Nucleus0.019

Rank 4 · LXL04_008724 · OH-1004

Peroxisome0.016

Rank 5 · LXL04_008724 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153.33Mito_carr6-103 aa

PF00153.33Mito_carr113-196 aa

PF00153.33Mito_carr203-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008724	`PF00153.33`	Mito_carr	6	103	3.1e-66	219.9
LXL04_008724	`PF00153.33`	Mito_carr	113	196	3.1e-66	219.9
LXL04_008724	`PF00153.33`	Mito_carr	203	292	3.1e-66	219.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LB08`	Arabidopsis thaliana	ADP/ATP translocase ER-ANT1	75.251%	Swiss-Prot	strong database homology

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