Gene Card
Gene overview
cDNA / CDS / Protein Sequences
807 bp · LXL04_008722|LXL04_008722|OH1004|cDNA
ATGGTAGAAGATGTCGACGAAGCCGGGACTGACAGGGGAGAACCTGCGGTGTTGCCGGACCAAAGAACTGGATTCACGAAGTTGGGAAATAGGTGGAGCTGGAATCGCCGGACTATTCCTCTTCGGTCCTCACAAATCGACGCATCTGTGCGCTGGAGGAGGTCGCCGACGATGGAGAAGGCGCTGGAGGAGGTCGCTGGTGAGGACTATTCCTCTTCGGTCCTCATAAATCGACGATGCCAGCGGGAGGTCAACGGCGA...
807 bp · LXL04_008722|LXL04_008722|OH1004|CDS
ATGGTAGAAGATGTCGACGAAGCCGGGACTGACAGGGGAGAACCTGCGGTGTTGCCGGACCAAAGAACTGGATTCACGAAGTTGGGAAATAGGTGGAGCTGGAATCGCCGGACTATTCCTCTTCGGTCCTCACAAATCGACGCATCTGTGCGCTGGAGGAGGTCGCCGACGATGGAGAAGGCGCTGGAGGAGGTCGCTGGTGAGGACTATTCCTCTTCGGTCCTCATAAATCGACGATGCCAGCGGGAGGTCAACGGCGA...
Protein
Download Protein FASTA268 aa · LXL04_008722|LXL04_008722|OH1004|PROTEIN
MVEDVDEAGTDRGEPAVLPDQRTGFTKLGNRWSWNRRTIPLRSSQIDASVRWRRSPTMEKALEEVAGEDYSSSVLINRRCQREVNGELGWQSAKVTNFTCEFNLSVLIRHRYGALLGTIDNELDFHLRCFLLASSSSRRLPRCFTNSIVAAARLLYDIHPTKHTNGGGFKVSGRICTQCLVSDPLVGELTVETSAIATETSIVQTTQIADGDVCRTISLPVYLILPRLLTCLENVCIIAANEIRIKKKWLNESLEEKLST...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008722 |
|---|---|
| TK1151 ID | TkA01G439670 |
| OH-1004 ID | LXL04_008722 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 75.900 |
| Protein coverage (%) | TK1151 68.246 / OH-1004 51.119Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008722 |
|---|---|
| Location | Chr02:106895169-106897541 (-) |
| Description | Similar to VPS26C: Vacuolar protein sorting-associated protein 26C |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0032456 endocytic recycling Biological Process GO:0005634 nucleus Cellular Component GO:0005768 endosome Cellular Component GO:0010008 endosome membrane Cellular Component GO:0032991 protein-containing complex Cellular Component |
| KEGG gene cross-reference | hsa:10311 mmu:13185 pon:100171577 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.