LXL04_008663 | RubberDandelionOmics

Gene overview

LXL04_008663

Reference: OH-1004 Chr: Chr02 Coordinates: 105470775-105472136 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · LXL04_008663|LXL04_008663|OH1004|cDNA

ATGGGTCAAGATGGTTTCACTGCTCAAAAGCGAGGCTCTTCCACGCTACCCACTTCCACCGCCCCAAACGGTGGCTCCCGGAGCAGCCGATCTCTCCTCCGCGGTGGCGGCGGAAACCGTCAGATCCATAAAACGCTTAACAACATCAAGATCACAATCCTCTGTGGTTTAGTTACAATTCTTGTTCTTCGTGGTACGATAGGTTTCGGGTCCCTCTCTTCCGACAATGACCTAGAGAACCAAGCGATTATTGAAGAAAC...

CDS

Download CDS FASTA

1362 bp · LXL04_008663|LXL04_008663|OH1004|CDS

ATGGGTCAAGATGGTTTCACTGCTCAAAAGCGAGGCTCTTCCACGCTACCCACTTCCACCGCCCCAAACGGTGGCTCCCGGAGCAGCCGATCTCTCCTCCGCGGTGGCGGCGGAAACCGTCAGATCCATAAAACGCTTAACAACATCAAGATCACAATCCTCTGTGGTTTAGTTACAATTCTTGTTCTTCGTGGTACGATAGGTTTCGGGTCCCTCTCTTCCGACAATGACCTAGAGAACCAAGCGATTATTGAAGAAAC...

Protein

Download Protein FASTA

453 aa · LXL04_008663|LXL04_008663|OH1004|PROTEIN

MGQDGFTAQKRGSSTLPTSTAPNGGSRSSRSLLRGGGGNRQIHKTLNNIKITILCGLVTILVLRGTIGFGSLSSDNDLENQAIIEETNRILAEIRSDKDPDDPEENLDQTTINLNDTYSLGAKISNWDEERSLWLSRNQDFPNIVNGKARILLVTGSPPSPCDNAIGDHYLLKSIKNKIDYCRIHGIEIVYNMAHLDKELAGYWAKLPLIRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYKDHNMVIHGYPDLLFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008663`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008663

Location Chr02:105470775-105472136 (+)

Description Similar to XXT3: Probable xyloglucan 6-xylosyltransferase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07720`	Probable xyloglucan xylosyltransferase involved in the biosynthesis of xyloglucan.	No verified direct reference in this release
`At1g74380`	Probable xyloglucan xylosyltransferase involved in the biosynthesis of xyloglucan in roots.	Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.2008 · DOI: 10.1111/j.1365-313x.2008.03580.x Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At1g18690`	Xylosyltransferase specific to UDP-D-xylose that accepts cellohexaose as substrate to produce xyloglucan.	Arabidopsis GT34 family contains five xyloglucan α-1,6-xylosyltransferases.2012 · DOI: 10.1111/j.1469-8137.2012.04196.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0529600`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release
`UniProt: B8AIZ4`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008663 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009969 xyloglucan biosynthetic process Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0048767 root hair elongation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0016758 hexosyltransferase activity Molecular Function

GO:0033843 xyloglucan 6-xylosyltransferase activity Molecular Function

GO:0035252 UDP-xylosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18690

ath:AT1G74380

ath:AT5G07720

dosa:Os02g0529600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.778

Rank 1 · LXL04_008663 · OH-1004

Endoplasmic reticulum0.155

Rank 2 · LXL04_008663 · OH-1004

Cytoplasm0.085

Rank 3 · LXL04_008663 · OH-1004

Cell membrane0.044

Rank 4 · LXL04_008663 · OH-1004

Nucleus0.035

Rank 5 · LXL04_008663 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05637.19Glyco_transf_34148-385 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008663	`PF05637.19`	Glyco_transf_34	148	385	1e-61	209.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LF80`	Arabidopsis thaliana	Probable xyloglucan 6-xylosyltransferase 3	76.652%	Swiss-Prot	strong database homology
`Q9CA75`	Arabidopsis thaliana	Probable xyloglucan 6-xylosyltransferase 5	75.219%	Swiss-Prot	strong database homology
`Q9M9U0`	Arabidopsis thaliana	Xyloglucan 6-xylosyltransferase 4	63.710%	Swiss-Prot	strong database homology
`Q6H765`	Oryza sativa subsp. japonica	Probable glycosyltransferase 2	68.037%	Swiss-Prot	strong database homology
`B8AIZ4`	Oryza sativa subsp. indica	Probable glycosyltransferase 2	68.037%	Swiss-Prot	strong database homology

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