LXL04_008659 | RubberDandelionOmics

Gene overview

LXL04_008659

Reference: OH-1004 Chr: Chr02 Coordinates: 105429620-105431501 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1746 bp · LXL04_008659|LXL04_008659|OH1004|cDNA

ATGAGAAGATTGAACAAAAATTACGGCGATCCACCCACATATTCCGGTCTCGGAGGCGACAGTATATGCCGGGATCAACAAACGAGATTTGGGTCGAGTCCTTTGAAATTAATGGGTTGTTTTGTCGTCTGCTTGATGGGTCTATCGGTTTTGTTCTCGATTTCTATAATTTTGAAGGATTCCACACCAACGAGCATCTGGGCTGTAGCTGATGCTAGAGTTCTTGATATGCCCCCTCCTAGAGATTTAGGTCAAGAAGA...

CDS

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1746 bp · LXL04_008659|LXL04_008659|OH1004|CDS

ATGAGAAGATTGAACAAAAATTACGGCGATCCACCCACATATTCCGGTCTCGGAGGCGACAGTATATGCCGGGATCAACAAACGAGATTTGGGTCGAGTCCTTTGAAATTAATGGGTTGTTTTGTCGTCTGCTTGATGGGTCTATCGGTTTTGTTCTCGATTTCTATAATTTTGAAGGATTCCACACCAACGAGCATCTGGGCTGTAGCTGATGCTAGAGTTCTTGATATGCCCCCTCCTAGAGATTTAGGTCAAGAAGA...

Protein

Download Protein FASTA

581 aa · LXL04_008659|LXL04_008659|OH1004|PROTEIN

MRRLNKNYGDPPTYSGLGGDSICRDQQTRFGSSPLKLMGCFVVCLMGLSVLFSISIILKDSTPTSIWAVADARVLDMPPPRDLGQEDEPMDSFAQHKKKLHSAGFEHEDKLLGGLLSSRFDQDSCLSRYESASFRKESPYKPSSDLISKLRRYEALHKRCGPYTESYNRTVAKLSSGEMIGEPSDCNYLIWVSFSGLGNRILTLGSAFVYALLTDRVLLVDRGADMDDLFCEPFPEVSWLLPLDFPIYDQFNKLNQKSPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008659`
TK1151 ID	TkA03G348350
OH-1004 ID	LXL04_008659
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.000
Protein coverage (%)	TK1151 100.000 / OH-1004 43.373 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008659

Location Chr02:105429620-105431501 (-)

Description Similar to FT1: Galactoside 2-alpha-L-fucosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g03220`	Involved in cell wall biosynthesis.	The mur2 mutant of Arabidopsis thaliana lacks fucosylated xyloglucan because of a lesion in fucosyltransferase AtFUT1.2002 · DOI: 10.1073/pnas.052450699 The galactose residues of xyloglucan are essential to maintain mechanical strength of the primary cell walls in Arabidopsis during growth.2004 · DOI: 10.1104/pp.103.027508 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At2g03210`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At1g14070`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At1g14100`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008659 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009969 xyloglucan biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0032580 Golgi cisterna membrane Cellular Component

GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity Molecular Function

GO:0008417 fucosyltransferase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G14100

ath:AT2G03210

ath:AT2G03220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.791

Rank 1 · LXL04_008659 · OH-1004

Endoplasmic reticulum0.085

Rank 2 · LXL04_008659 · OH-1004

Cytoplasm0.062

Rank 3 · LXL04_008659 · OH-1004

Cell membrane0.060

Rank 4 · LXL04_008659 · OH-1004

Lysosome / Vacuole0.040

Rank 5 · LXL04_008659 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03254.18XG_FTase104-546 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008659	`PF03254.18`	XG_FTase	104	546	4.5e-204	679.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SWH5`	Arabidopsis thaliana	Galactoside 2-alpha-L-fucosyltransferase	58.845%	Swiss-Prot	strong database homology
`O81053`	Arabidopsis thaliana	Fucosyltransferase 2	58.174%	Swiss-Prot	strong database homology
`Q9XI81`	Arabidopsis thaliana	Probable fucosyltransferase 7	55.975%	Swiss-Prot	strong database homology
`Q9XI78`	Arabidopsis thaliana	Probable fucosyltransferase 8	55.021%	Swiss-Prot	strong database homology

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