Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1197 bp · LXL04_008631|LXL04_008631|OH1004|cDNA
GTATTAGCCGAACACTTCGTAAGTAAGCAGCCTACTCCAAAATCAATTCGGGCTTCCTCCTTCACCTTCAATCGGCGACGACTCACGACAGCTTCAATCGGCGACCGTCCGCCGTCGCACGCAGCCACGCAGGCTTGCAGATTCAGCCCCACCGTCGCACGCAGTCCATAGtcattgctaaaaccctatgTACTCTCGCGCCTTCCCGTTGTGTATATTCTTAATTTCTTATTAACCTTGGCGTCTCCGGCAGTCTCCGC...
1023 bp · LXL04_008631|LXL04_008631|OH1004|CDS
TTGCTAAAACCCTATGTACTCTCGCGCCTTCCCGTTGTGTATATTCTTAATTTCTTATTAACCTTGGCGTCTCCGGCAGTCTCCGCGATATCGGTACCTCTCGCTCTCATACACATACATACGCGCATGTTTCAAAGAGGAATAAAAAGTAGAACTTTGTGCGAAAACCTGTTTTTGTCCCCTTTTGTTTCTAGACTCTGCAACTGGGCAACAATGGAAACAAAGAAGAAAAAGGGTCTGAATATCGAAGGGTACCCTAT...
Protein
Download Protein FASTA340 aa · LXL04_008631|LXL04_008631|OH1004|PROTEIN
MLKPYVLSRLPVVYILNFLLTLASPAVSAISVPLALIHIHTRMFQRGIKSRTLCENLFLSPFVSRLCNWATMETKKKKGLNIEGYPIEGLSIAGHETCIIVPSLNLAFDIGKCPQRAISQQFLFISHGHMDHIGGLPMYVATRGLYRMAPPTIIVPKVIKENVEKIFEAHRAMDQSELNHTLIGLDIGEEFYLRKDIKGYVVYSVKQKLKPEYIGLSGGEIKKLKFSGVEITNTTTSPEIAFTGDTTADFILDNDNVDVL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008631 |
|---|---|
| TK1151 ID | TkA03G351740 |
| OH-1004 ID | LXL04_008631 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 79.000 |
| Protein coverage (%) | TK1151 74.031 / OH-1004 56.471Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008631 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:104635787-104637961 (+) | |||||||||
| Description | Similar to TRZ1: tRNase Z TRZ1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0008033 tRNA processing Biological Process GO:0042780 tRNA 3'-end processing Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0042781 3'-tRNA processing endoribonuclease activity Molecular Function GO:0042802 identical protein binding Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G74700 ath:AT2G04530 mmq:MmarC5_0713 ssp:SSP1249 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12706.14Lactamase_B_2121-309 aaPF23023.2Anti-Pycsar_Apyc1122-312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008631 | PF12706.14 | Lactamase_B_2 | 121 | 309 | 9.7e-10 | 39.1 |
| LXL04_008631 | PF23023.2 | Anti-Pycsar_Apyc1 | 122 | 312 | 2.7e-06 | 28.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.