LXL04_008582 | RubberDandelionOmics

Gene overview

LXL04_008582

Reference: OH-1004 Chr: Chr02 Coordinates: 103179879-103184133 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2562 bp · LXL04_008582|LXL04_008582|OH1004|cDNA

ATGCTTCCCTTCGACATCAATACGAACCATTTCGAAAGTAAGTCAGCACAAAATTGGGGGGAAATCAGTCGCCTACCAAACATTACAGTTCATGTTGTAAGACTGTGGTTGAGCTGTAGAAACAAATGGTGGTTTCTGAGAATCGTTAAATGCATTGAACGTATTGGTTGTTCCTTAGGAACGATTCTTGTAGACATAATATCGTGCGATGTTGGTGGAGGAGAAGTGGGCAGAGGAGAAATGGGCGGAGGCAGAGTGGT...

CDS

Download CDS FASTA

2562 bp · LXL04_008582|LXL04_008582|OH1004|CDS

ATGCTTCCCTTCGACATCAATACGAACCATTTCGAAAGTAAGTCAGCACAAAATTGGGGGGAAATCAGTCGCCTACCAAACATTACAGTTCATGTTGTAAGACTGTGGTTGAGCTGTAGAAACAAATGGTGGTTTCTGAGAATCGTTAAATGCATTGAACGTATTGGTTGTTCCTTAGGAACGATTCTTGTAGACATAATATCGTGCGATGTTGGTGGAGGAGAAGTGGGCAGAGGAGAAATGGGCGGAGGCAGAGTGGT...

Protein

Download Protein FASTA

853 aa · LXL04_008582|LXL04_008582|OH1004|PROTEIN

MLPFDINTNHFESKSAQNWGEISRLPNITVHVVRLWLSCRNKWWFLRIVKCIERIGCSLGTILVDIISCDVGGGEVGRGEMGGGRVVLMRLGLRRSGAEIIGRAVDRRRPVKASSTPPHFLSHAQTHTTTSLSTTQPSKRVRGLTPCSFISLGVSHLQTGELRASSNSFWVLGNWKNLNMKRTKLDWFMSLRQKRSIQFLIGLGFLYLLIVGLEVPFVSKIVRQEDESSVFFFSDKLSKKPYALDSEEELQEKEAPIRPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008582`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008582

Location Chr02:103179879-103184133 (-)

Description Similar to GALT6: Hydroxyproline O-galactosyltransferase GALT6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62620`	Possesses hydroxyproline O-galactosyltransferase activity.	A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g74800`	Possesses hydroxyproline O-galactosyltransferase activity.	Two Hydroxyproline Galactosyltransferases, GALT5 and GALT2, Function in Arabinogalactan-Protein Glycosylation, Growth and Development in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0125624 A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g27120`	Possesses hydroxyproline O-galactosyltransferase activity.	A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At4g21060`	Possesses hydroxyproline O-galactosyltransferase activity.	Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis.2013 · DOI: 10.1074/jbc.m112.432609 Two Hydroxyproline Galactosyltransferases, GALT5 and GALT2, Function in Arabinogalactan-Protein Glycosylation, Growth and Development in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0125624 A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g26810`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue.	A unique beta1,3-galactosyltransferase is indispensable for the biosynthesis of N-glycans containing Lewis a structures in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.052985

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008582 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006493 protein O-linked glycosylation Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010405 arabinogalactan protein metabolic process Biological Process

GO:0010493 Lewis a epitope biosynthetic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0080147 root hair cell development Biological Process

GO:0180062 protein O-linked glycosylation via galactose Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G26810

ath:AT1G27120

ath:AT1G74800

ath:AT4G21060

ath:AT5G62620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.763

Rank 1 · LXL04_008582 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_008582 · OH-1004

Cell membrane0.071

Rank 3 · LXL04_008582 · OH-1004

Cytoplasm0.065

Rank 4 · LXL04_008582 · OH-1004

Extracellular0.056

Rank 5 · LXL04_008582 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00337.30Gal-bind_lectin368-571 aa

PF01762.28Galactosyl_T620-800 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008582	`PF00337.30`	Gal-bind_lectin	368	571	5.2e-28	97.8
LXL04_008582	`PF01762.28`	Galactosyl_T	620	800	8.5e-31	108.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV16`	Arabidopsis thaliana	Hydroxyproline O-galactosyltransferase GALT6	65.588%	Swiss-Prot	strong database homology
`Q8RX55`	Arabidopsis thaliana	Hydroxyproline O-galactosyltransferase GALT5	63.796%	Swiss-Prot	strong database homology
`Q8GXG6`	Arabidopsis thaliana	Hydroxyproline O-galactosyltransferase GALT4	68.430%	Swiss-Prot	moderate database homology
`A7XDQ9`	Arabidopsis thaliana	Hydroxyproline O-galactosyltransferase GALT2	57.762%	Swiss-Prot	moderate database homology
`Q8L7F9`	Arabidopsis thaliana	Beta-1,3-galactosyltransferase GALT1	35.986%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card