LXL04_008332 | RubberDandelionOmics

Gene overview

LXL04_008332

Reference: OH-1004 Chr: Chr02 Coordinates: 96865279-96866436 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1158 bp · LXL04_008332|LXL04_008332|OH1004|cDNA

ATGGAAGATTTGGGCTGGGAAAGAAACATGTTGTCGTTTCCATGGAGCAACTCCAATAATCATCAGCAGCAGCAGCAAGACATCGGGAAAAGCTTCGTTTTTGGTTCAGACAATAGCATCCTAGATCACTTAACAGCTGCAGGCGGCCGTCAAATGGGTTCTCATCCGTTAGCACCGGCGAGGATAGATTCCACTAATGTACCCTCAAGTTTCGGTACTGCTAGTCAATATTGGTCTCAAGGGATGGTTGTCAATGGTTT...

CDS

Download CDS FASTA

1158 bp · LXL04_008332|LXL04_008332|OH1004|CDS

ATGGAAGATTTGGGCTGGGAAAGAAACATGTTGTCGTTTCCATGGAGCAACTCCAATAATCATCAGCAGCAGCAGCAAGACATCGGGAAAAGCTTCGTTTTTGGTTCAGACAATAGCATCCTAGATCACTTAACAGCTGCAGGCGGCCGTCAAATGGGTTCTCATCCGTTAGCACCGGCGAGGATAGATTCCACTAATGTACCCTCAAGTTTCGGTACTGCTAGTCAATATTGGTCTCAAGGGATGGTTGTCAATGGTTT...

Protein

Download Protein FASTA

385 aa · LXL04_008332|LXL04_008332|OH1004|PROTEIN

MEDLGWERNMLSFPWSNSNNHQQQQQDIGKSFVFGSDNSILDHLTAAGGRQMGSHPLAPARIDSTNVPSSFGTASQYWSQGMVVNGFHEGKNVIPITTAATDHPGVATAVVAVNSLESLDCLLSTTNSNGADTSPDHEDGISVIFSDYNNLCNDNVLFTNNNNLSGVSSGDSITKEIDDGIVSKCSSDKRRKGFYDDNPSKPKKPRSDPGLPTSSNINFRQTMDFDEPDSEAIAQMKEMIYRAAAFRPVSFADEEAVEKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008332`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008332

Location Chr02:96865279-96866436 (+)

Description Similar to BHLH87: Transcription factor bHLH87

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21330`	Transcription factor bHLH87.	No verified direct reference in this release
`At4g00120`	Transcription regulator required for seed dispersal.	No verified direct reference in this release
`At3g50330`	Required for the female reproductive tract development and fertility.	The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.011510
`At5g67060`	Required for the female reproductive tract development and fertility.	The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.011510

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0541400`	Transcription factor involved in the negative regulation of flowering.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008332 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010500 transmitting tissue development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048462 carpel formation Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0048587 regulation of short-day photoperiodism, flowering Biological Process

GO:0080126 ovary septum development Biological Process

KEGG gene cross-reference

ath:AT3G21330

ath:AT3G50330

ath:AT4G00120

ath:AT5G67060

dosa:Os05g0541400

osa:9269440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · LXL04_008332 · OH-1004

Cytoplasm0.080

Rank 2 · LXL04_008332 · OH-1004

Cell membrane0.029

Rank 3 · LXL04_008332 · OH-1004

Endoplasmic reticulum0.021

Rank 4 · LXL04_008332 · OH-1004

Plastid0.013

Rank 5 · LXL04_008332 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010.32HLH275-317 aa

PF23173.3bHLH_SAC51278-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008332	`PF00010.32`	HLH	275	317	2.6e-06	27.8
LXL04_008332	`PF23173.3`	bHLH_SAC51	278	319	5.2e-10	39.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S3D2`	Arabidopsis thaliana	Transcription factor bHLH87	45.860%	Swiss-Prot	moderate database homology
`O81313`	Arabidopsis thaliana	Transcription factor IND	63.158%	Swiss-Prot	weak database homology
`Q9SND4`	Arabidopsis thaliana	Transcription factor HEC2	52.206%	Swiss-Prot	weak database homology
`Q9FHA7`	Arabidopsis thaliana	Transcription factor HEC1	66.667%	Swiss-Prot	weak database homology
`A0A0P0WQ90`	Oryza sativa subsp. japonica	Transcription factor LATE FLOWERING	65.138%	Swiss-Prot	weak database homology

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