LXL04_008326 | RubberDandelionOmics

Gene overview

LXL04_008326

Reference: OH-1004 Chr: Chr02 Coordinates: 96566200-96568163 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · LXL04_008326|LXL04_008326|OH1004|cDNA

ATGTTTATGAAAACCAGGTGGCTGATATTTGACAGGCAACTGAAAAGATCCAATTCTAAGAAGCTGTTAATTATCAACAGGAAGAAGCAAAAAACAGACCATTCATCTAAGACACAAAACAAGAAAGATAATCCAAGTAATAGACCATTAACAACCCACAGTAAGTCAAAGAGAAAGCTTTCCTCCATTTCAAGAAAAGCAATCAGCAAAAGAAAGAAACGAAAAATGGAAAAGGTTGTTAAAGTAGATGAACCCATTGA...

CDS

Download CDS FASTA

1740 bp · LXL04_008326|LXL04_008326|OH1004|CDS

ATGTTTATGAAAACCAGGTGGCTGATATTTGACAGGCAACTGAAAAGATCCAATTCTAAGAAGCTGTTAATTATCAACAGGAAGAAGCAAAAAACAGACCATTCATCTAAGACACAAAACAAGAAAGATAATCCAAGTAATAGACCATTAACAACCCACAGTAAGTCAAAGAGAAAGCTTTCCTCCATTTCAAGAAAAGCAATCAGCAAAAGAAAGAAACGAAAAATGGAAAAGGTTGTTAAAGTAGATGAACCCATTGA...

Protein

Download Protein FASTA

579 aa · LXL04_008326|LXL04_008326|OH1004|PROTEIN

MFMKTRWLIFDRQLKRSNSKKLLIINRKKQKTDHSSKTQNKKDNPSNRPLTTHSKSKRKLSSISRKAISKRKKRKMEKVVKVDEPIDRISELPEPIIHHILSLLNCPRDVARVTALSKKWKTIWDSFFFFQFDEKRFNSSKKDGGEKFMNFVDTSLLTKLIPMDTIHKFKISLSQTNTKLNLSMYRWLNSAINKNVKELEIHIEEKKKRLYKLPNFILTANTLTSLRLYGCTFDNEANIDLQNLKQLSIKKSYVNTDVIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008326`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008326

Location Chr02:96566200-96568163 (-)

Description Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13570`	F-box/FBD/LRR-repeat protein At1g13570.	No verified direct reference in this release
`At1g51370`	F-box/FBD/LRR-repeat protein At1g51370.	No verified direct reference in this release
`At3g59200`	F-box/LRR-repeat protein At3g59200.	No verified direct reference in this release
`At4g00320`	Putative F-box/LRR-repeat protein At4g00320.	No verified direct reference in this release
`At5g22730`	FBD-associated F-box protein At5g22730.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008326 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G13570

ath:AT1G51370

ath:AT3G59200

ath:AT4G00320

ath:AT5G22730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.931

Rank 1 · LXL04_008326 · OH-1004

Cytoplasm0.103

Rank 2 · LXL04_008326 · OH-1004

Cell membrane0.033

Rank 3 · LXL04_008326 · OH-1004

Endoplasmic reticulum0.024

Rank 4 · LXL04_008326 · OH-1004

Plastid0.012

Rank 5 · LXL04_008326 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937.13F-box-like89-124 aa

PF23622.2LRR_At1g61320_AtMIF1166-322 aa

PF24758.2LRR_At5g56370186-338 aa

PF23622.2LRR_At1g61320_AtMIF1328-442 aa

PF24758.2LRR_At5g56370332-405 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008326	`PF12937.13`	F-box-like	89	124	8.2e-06	26.2
LXL04_008326	`PF23622.2`	LRR_At1g61320_AtMIF1	166	322	4e-28	99.6
LXL04_008326	`PF24758.2`	LRR_At5g56370	186	338	8.1e-20	72.2
LXL04_008326	`PF23622.2`	LRR_At1g61320_AtMIF1	328	442	4e-28	99.6
LXL04_008326	`PF24758.2`	LRR_At5g56370	332	405	8.1e-20	72.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ70`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g13570	32.143%	Swiss-Prot	weak database homology
`Q6DBN6`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g51370	31.220%	Swiss-Prot	weak database homology
`Q9LX51`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59200	29.703%	Swiss-Prot	weak database homology
`P0C2G6`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At4g00320	28.293%	Swiss-Prot	weak database homology
`Q9FNI8`	Arabidopsis thaliana	FBD-associated F-box protein At5g22730	29.255%	Swiss-Prot	weak database homology

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