LXL04_008309 | RubberDandelionOmics

Gene overview

LXL04_008309

Reference: OH-1004 Chr: Chr02 Coordinates: 96269913-96270764 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

852 bp · LXL04_008309|LXL04_008309|OH1004|cDNA

ATGtcgtcatcatcatcatctccacAAACCACCGCCAACGGCGGAGAAAACGAAGGCGACTGGGTCTGGAACGAAATCAAAGCCGAAGCTCGCCGCGACGCCGAATCAGAGCCCGCCCTCGCCAGCTACCTCTACTCCACCATCATCTCTCACTCTTCTCTCACACGCTCTCTCTCTTTCCATTTAGGAAACAAACTCTGCTCCTCCACTCTGCTATCCACGCTCCTCTACGATCTCTTCCTCAACACCTTCTCCTCCGA...

CDS

Download CDS FASTA

852 bp · LXL04_008309|LXL04_008309|OH1004|CDS

ATGTCGTCATCATCATCATCTCCACAAACCACCGCCAACGGCGGAGAAAACGAAGGCGACTGGGTCTGGAACGAAATCAAAGCCGAAGCTCGCCGCGACGCCGAATCAGAGCCCGCCCTCGCCAGCTACCTCTACTCCACCATCATCTCTCACTCTTCTCTCACACGCTCTCTCTCTTTCCATTTAGGAAACAAACTCTGCTCCTCCACTCTGCTATCCACGCTCCTCTACGATCTCTTCCTCAACACCTTCTCCTCCGA...

Protein

Download Protein FASTA

283 aa · LXL04_008309|LXL04_008309|OH1004|PROTEIN

MSSSSSSPQTTANGGENEGDWVWNEIKAEARRDAESEPALASYLYSTIISHSSLTRSLSFHLGNKLCSSTLLSTLLYDLFLNTFSSDASLLSATVADLRAARQRDPACISFAHCLLNYKGFLAIQAHRVAHRLWALNRKPIALALHSRIADVFAVDIHPAARVGKGILLDHATGVVIGETAVVGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATVLGNVKIGEGAKIGAGSLVMIDVPPWTTAVGNPARLVGGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008309`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008309

Location Chr02:96269913-96270764 (+)

Description Similar to SAT5: Serine acetyltransferase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56760`	Serine acetyltransferase 5.	No verified direct reference in this release
`At1g55920`	Serine acetyltransferase which catalyzes the formation of O-acetyl-L-serine from acetyl-CoA and L-serine.	No verified direct reference in this release
`At3g13110`	Serine acetyltransferase 3, mitochondrial.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0533500`	Probable serine acetyltransferase 5.	No verified direct reference in this release
`Os01g0720700`	Probable serine acetyltransferase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008309 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006535 L-cysteine biosynthetic process from L-serine Biological Process

GO:0009970 cellular response to sulfate starvation Biological Process

GO:0019344 L-cysteine biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0009001 serine O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G55920

ath:AT3G13110

ath:AT5G56760

dosa:Os01g0720700

dosa:Os05g0533500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469

Rank 1 · LXL04_008309 · OH-1004

Nucleus0.264

Rank 2 · LXL04_008309 · OH-1004

Mitochondrion0.167

Rank 3 · LXL04_008309 · OH-1004

Peroxisome0.108

Rank 4 · LXL04_008309 · OH-1004

Plastid0.094

Rank 5 · LXL04_008309 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06426.20SATase_N22-126 aa

PF00132.31Hexapep206-239 aa

PF14602.13Hexapep_2208-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008309	`PF06426.20`	SATase_N	22	126	1.4e-34	119.2
LXL04_008309	`PF00132.31`	Hexapep	206	239	2.1e-13	50.0
LXL04_008309	`PF14602.13`	Hexapep_2	208	238	6e-07	29.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42538`	Arabidopsis thaliana	Serine acetyltransferase 5	84.231%	Swiss-Prot	strong database homology
`Q42588`	Arabidopsis thaliana	Serine acetyltransferase 1, chloroplastic	58.935%	Swiss-Prot	strong database homology
`Q39218`	Arabidopsis thaliana	Serine acetyltransferase 3, mitochondrial	57.934%	Swiss-Prot	strong database homology
`Q0DGG8`	Oryza sativa subsp. japonica	Probable serine acetyltransferase 5	76.692%	Swiss-Prot	strong database homology
`Q8W0E4`	Oryza sativa subsp. japonica	Probable serine acetyltransferase 1	74.906%	Swiss-Prot	strong database homology

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