LXL04_008246 | RubberDandelionOmics

Gene overview

LXL04_008246

Reference: OH-1004 Chr: Chr02 Coordinates: 94727136-94742555 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4026 bp · LXL04_008246|LXL04_008246|OH1004|cDNA

ATGAAAGGCGTGGGTAAAGAAATGACTAAGTACCTTAATGATTTTCAGTTTGGGGTTGGAGTGTCAGGTGGCGCTGAGGCTGTTTTACATAGTGTCAACAGGGTGATGAGAGAGCATCAAGCTGATGGGTCTTTTTCCATGCTCACGGTGGATTTCTCTAATGCTTTCAACGTTGTGGATAGATCAGCTTTACTCCATGAGGTTAGGAGGAGGTGTCATTCTATTTCTTTGTGGGTGGATTTCTTATATGGTCAGGCAGC...

CDS

Download CDS FASTA

4026 bp · LXL04_008246|LXL04_008246|OH1004|CDS

ATGAAAGGCGTGGGTAAAGAAATGACTAAGTACCTTAATGATTTTCAGTTTGGGGTTGGAGTGTCAGGTGGCGCTGAGGCTGTTTTACATAGTGTCAACAGGGTGATGAGAGAGCATCAAGCTGATGGGTCTTTTTCCATGCTCACGGTGGATTTCTCTAATGCTTTCAACGTTGTGGATAGATCAGCTTTACTCCATGAGGTTAGGAGGAGGTGTCATTCTATTTCTTTGTGGGTGGATTTCTTATATGGTCAGGCAGC...

Protein

Download Protein FASTA

1341 aa · LXL04_008246|LXL04_008246|OH1004|PROTEIN

MKGVGKEMTKYLNDFQFGVGVSGGAEAVLHSVNRVMREHQADGSFSMLTVDFSNAFNVVDRSALLHEVRRRCHSISLWVDFLYGQAARLYIGDKHIWSATGVQQGDPLGPLLFALVLHPYGRGGEVIDIIRVTGPTLGLELNIKKTEIFWPSCDGRKLREGLFPVDIRRPSLGVKLLGGAVSRDRGFISELAMKRAVNADSYVTHKVSSYCFDLVWALPNFSLVYERARPYTWRRLLCFLTKALQNHILRDSDICGMDDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008246`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008246

Location Chr02:94727136-94742555 (-)

Description Similar to SLC25A44: Solute carrier family 25 member 44

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67120`	Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits.	The MIDASIN and NOTCHLESS genes are essential for female gametophyte development in Arabidopsis thaliana.2010 · DOI: 10.1007/s12298-010-0005-y The Mutation of Glu at Amino Acid 3838 of AtMDN1 Provokes Pleiotropic Developmental Phenotypes in Arabidopsis.2016 · DOI: 10.1038/srep36446

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008246 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000027 ribosomal large subunit assembly Biological Process

GO:0006865 amino acid transport Biological Process

GO:0009083 branched-chain amino acid catabolic process Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0015803 branched-chain amino acid transport Biological Process

GO:0048638 regulation of developmental growth Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0120161 regulation of cold-induced thermogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

KEGG gene cross-reference

ath:AT1G67120

ddi:DDB_G0280083

hsa:9673

mmu:229517

pon:100172017

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.403

Rank 1 · LXL04_008246 · OH-1004

Cytoplasm0.253

Rank 2 · LXL04_008246 · OH-1004

Peroxisome0.156

Rank 3 · LXL04_008246 · OH-1004

Plastid0.128

Rank 4 · LXL04_008246 · OH-1004

Nucleus0.097

Rank 5 · LXL04_008246 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078.33RVT_140-119 aa

PF00078.33RVT_1680-815 aa

PF00153.33Mito_carr1061-1102 aa

PF00153.33Mito_carr1118-1216 aa

PF00153.33Mito_carr1244-1334 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008246	`PF00078.33`	RVT_1	40	119	1.1e-19	71.8
LXL04_008246	`PF00078.33`	RVT_1	680	815	1.1e-19	71.8
LXL04_008246	`PF00153.33`	Mito_carr	1061	1102	4e-49	165.0
LXL04_008246	`PF00153.33`	Mito_carr	1118	1216	4e-49	165.0
LXL04_008246	`PF00153.33`	Mito_carr	1244	1334	4e-49	165.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8AUY4`	Arabidopsis thaliana	Midasin	50.000%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card