LXL04_007857 | RubberDandelionOmics

Gene overview

LXL04_007857

Reference: OH-1004 Chr: Chr02 Coordinates: 67656929-67659241 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

621 bp · LXL04_007857|LXL04_007857|OH1004|cDNA

ATGCAGAGTATTGCAGGATTTAGAGTAATTCACGAAACACAAAAGGCGAAAGGCAAAATTGCTGTCACAATCGCCAATTTCAAAGAAGGCTGGAAATTGATAGGTATAAGATTGGATTATAATTCGCCCGTTTGTTTGTTTCGTAGTATCCCAATTGGTCTTTTGACTAATATTATAATTCGCATGGCTGCTAGAAGACCTTCTGCTCTTTTACTCACTGATTCAAATGTATTACTCAGTGTAATTAGTAATTACACTTT...

CDS

Download CDS FASTA

621 bp · LXL04_007857|LXL04_007857|OH1004|CDS

ATGCAGAGTATTGCAGGATTTAGAGTAATTCACGAAACACAAAAGGCGAAAGGCAAAATTGCTGTCACAATCGCCAATTTCAAAGAAGGCTGGAAATTGATAGGTATAAGATTGGATTATAATTCGCCCGTTTGTTTGTTTCGTAGTATCCCAATTGGTCTTTTGACTAATATTATAATTCGCATGGCTGCTAGAAGACCTTCTGCTCTTTTACTCACTGATTCAAATGTATTACTCAGTGTAATTAGTAATTACACTTT...

Protein

Download Protein FASTA

206 aa · LXL04_007857|LXL04_007857|OH1004|PROTEIN

MQSIAGFRVIHETQKAKGKIAVTIANFKEGWKLIGIRLDYNSPVCLFRSIPIGLLTNIIIRMAARRPSALLLTDSNVLLSVISNYTFLVISKVMKKNPIYVLSDTLAVEALQKMVQGLYLPFVENGKVIALLDIAKCLYDAIARMERAAEKGKAIEAVVEGVEKHWGSTLPGPNSFIETLTERMFKPALSTIISDNTLSTKNIFID

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007857`
TK1151 ID	TkA06G089810
OH-1004 ID	LXL04_007857
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.700
Protein coverage (%)	TK1151 100.000 / OH-1004 54.854 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007857

Location Chr02:67656929-67659241 (-)

Description Similar to CBSCBSPB5: CBS domain-containing protein CBSCBSPB5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50640`	CBS domain-containing protein CBSCBSPB5.	No verified direct reference in this release
`At5g50530`	CBS domain-containing protein CBSCBSPB4.	No verified direct reference in this release
`At5g63490`	CBS domain-containing protein CBSCBSPB1.	No verified direct reference in this release
`At3g52950`	CBS domain-containing protein CBSCBSPB3.	No verified direct reference in this release
`At2g36500`	CBS domain-containing protein CBSCBSPB2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007857 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G36500

ath:AT3G52950

ath:AT5G50530

ath:AT5G50640

ath:AT5G63490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.284

Rank 1 · LXL04_007857 · OH-1004

Endoplasmic reticulum0.223

Rank 2 · LXL04_007857 · OH-1004

Nucleus0.218

Rank 3 · LXL04_007857 · OH-1004

Mitochondrion0.156

Rank 4 · LXL04_007857 · OH-1004

Cell membrane0.155

Rank 5 · LXL04_007857 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0DH79`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB5	66.667%	Swiss-Prot	moderate database homology
`Q0WLC7`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB4	66.667%	Swiss-Prot	moderate database homology
`Q9FMV3`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB1	66.667%	Swiss-Prot	moderate database homology
`Q9LF97`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB3	62.092%	Swiss-Prot	moderate database homology
`Q9SJQ5`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB2	58.824%	Swiss-Prot	moderate database homology

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