LXL04_007823 | RubberDandelionOmics

Gene overview

LXL04_007823

Reference: OH-1004 Chr: Chr02 Coordinates: 64176744-64184492 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

597 bp · LXL04_007823|LXL04_007823|OH1004|cDNA

ATGTCCTTCTCTCAATATATGAAAGAATTTACATTCACAACTATCTCTCCAAATATGAAACCTTTGCTACTACCGACACCGCCTCTAACCAACACTATTACCTCTGAAATCACCCATCTTATTAATCTGAAAAATGGATATACAAACAAGGTGAAAACCCTAGTTCTGACAAAAATGAAAACGACTCTGAAAAGCCAAGATGCTTCACCGCCTCCCTCTCCCCATATGTCAACCTACAACCACTACCACCAACCTCTGGA...

CDS

Download CDS FASTA

597 bp · LXL04_007823|LXL04_007823|OH1004|CDS

ATGTCCTTCTCTCAATATATGAAAGAATTTACATTCACAACTATCTCTCCAAATATGAAACCTTTGCTACTACCGACACCGCCTCTAACCAACACTATTACCTCTGAAATCACCCATCTTATTAATCTGAAAAATGGATATACAAACAAGGTGAAAACCCTAGTTCTGACAAAAATGAAAACGACTCTGAAAAGCCAAGATGCTTCACCGCCTCCCTCTCCCCATATGTCAACCTACAACCACTACCACCAACCTCTGGA...

Protein

Download Protein FASTA

198 aa · LXL04_007823|LXL04_007823|OH1004|PROTEIN

MSFSQYMKEFTFTTISPNMKPLLLPTPPLTNTITSEITHLINLKNGYTNKVKTLVLTKMKTTLKSQDASPPPSPHMSTYNHYHQPLESKMEVNMLKNEIDVLQKGLRYMFEGGAGKMTLDELRILESNLEVWMYHIRSAKMDIMAQEIQLLKNKEGILKAANKCLQEQMEMQFGAVNNDPTMANIPYPLTIQNEIYQC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007823`
TK1151 ID	TkA03G216680
OH-1004 ID	LXL04_007823
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007823

Location Chr02:64176744-64184492 (-)

Description Similar to MADS33: MADS-box transcription factor 33

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71692`	Probable transcription activator that regulates root development by controlling cell proliferation in root meristem.	An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis.2008 · DOI: 10.1104/pp.107.108647

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0206800`	Probable transcription factor.	No verified direct reference in this release
`Os08g0112700`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2YQK9`	Probable transcription factor.	No verified direct reference in this release
`Os07g0605200`	Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot.	Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB.2002 · DOI: 10.1074/jbc.m202546200 Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes.2004 · DOI: 10.1104/pp.104.045039

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007823 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G71692

dosa:Os07g0605200

dosa:Os08g0112700

dosa:Os12g0206800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.853

Rank 1 · LXL04_007823 · OH-1004

Cytoplasm0.232

Rank 2 · LXL04_007823 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_007823 · OH-1004

Endoplasmic reticulum0.024

Rank 4 · LXL04_007823 · OH-1004

Mitochondrion0.018

Rank 5 · LXL04_007823 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01486.23K-box86-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007823	`PF01486.23`	K-box	86	169	1.3e-19	70.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38841`	Arabidopsis thaliana	Agamous-like MADS-box protein AGL12	46.429%	Swiss-Prot	moderate database homology
`Q2QW55`	Oryza sativa subsp. japonica	MADS-box transcription factor 33	58.025%	Swiss-Prot	weak database homology
`Q0J8G8`	Oryza sativa subsp. japonica	MADS-box transcription factor 26	46.154%	Swiss-Prot	moderate database homology
`A2YQK9`	Oryza sativa subsp. indica	MADS-box transcription factor 26	46.154%	Swiss-Prot	moderate database homology
`Q0D4T4`	Oryza sativa subsp. japonica	MADS-box transcription factor 18	37.805%	Swiss-Prot	weak database homology

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