LXL04_007542 | RubberDandelionOmics

Gene overview

LXL04_007542

Reference: OH-1004 Chr: Chr02 Coordinates: 51575066-51577868 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1578 bp · LXL04_007542|LXL04_007542|OH1004|cDNA

ATGTGCAAAACAAACGCTCAGATTCGGACCGAGTCAAAAATTAGTACCGACCGGACCCAATCCAACCCAAATCAAACAGCCCTAACTTGCACATTGACTGAGAAACATAGCGAGCAATTAGTTTCAGAAGAAGAAAAATACACCATGCCTCGCGAAATCATCAATTTGCAAGTAGGGCAATGTGGAAATCAGATCGGGATGGAGTTCTGGAAACAACTATGCCTTGAACACGGGATATCTAAAGACGGCATTCTCGAGGA...

CDS

Download CDS FASTA

1578 bp · LXL04_007542|LXL04_007542|OH1004|CDS

ATGTGCAAAACAAACGCTCAGATTCGGACCGAGTCAAAAATTAGTACCGACCGGACCCAATCCAACCCAAATCAAACAGCCCTAACTTGCACATTGACTGAGAAACATAGCGAGCAATTAGTTTCAGAAGAAGAAAAATACACCATGCCTCGCGAAATCATCAATTTGCAAGTAGGGCAATGTGGAAATCAGATCGGGATGGAGTTCTGGAAACAACTATGCCTTGAACACGGGATATCTAAAGACGGCATTCTCGAGGA...

Protein

Download Protein FASTA

525 aa · LXL04_007542|LXL04_007542|OH1004|PROTEIN

MCKTNAQIRTESKISTDRTQSNPNQTALTCTLTEKHSEQLVSEEEKYTMPREIINLQVGQCGNQIGMEFWKQLCLEHGISKDGILEEYATQGGAGDRKDVFFYQADDQHYIPRALLVDLEPRVINGIQTGEYRDLYNHENIFISQEGAGAGNNWASGYDQGKHFEEDLMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYILETLNDHYSKKLIQTYSVFPNQNETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007542`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007542

Location Chr02:51575066-51577868 (-)

Description Similar to TUBG1: Tubulin gamma-1 chain

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61650`	Tubulin is the major constituent of microtubules.	Feeding cells induced by phytoparasitic nematodes require γ-tubulin ring complex for microtubule reorganization.2011 · DOI: 10.1371/journal.ppat.1002343
`At5g05620`	Tubulin is the major constituent of microtubules.	Feeding cells induced by phytoparasitic nematodes require γ-tubulin ring complex for microtubule reorganization.2011 · DOI: 10.1371/journal.ppat.1002343

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0156600`	Tubulin is the major constituent of microtubules.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007542 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000070 mitotic sister chromatid segregation Biological Process

GO:0000212 meiotic spindle organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009624 response to nematode Biological Process

GO:0010103 stomatal complex morphogenesis Biological Process

GO:0031122 cytoplasmic microtubule organization Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0048366 leaf development Biological Process

GO:0048768 root hair cell tip growth Biological Process

KEGG gene cross-reference

ath:AT3G61650

ath:AT5G05620

dosa:Os05g0156600

zma:542436

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.669

Rank 1 · LXL04_007542 · OH-1004

Nucleus0.162

Rank 2 · LXL04_007542 · OH-1004

Mitochondrion0.153

Rank 3 · LXL04_007542 · OH-1004

Cell membrane0.054

Rank 4 · LXL04_007542 · OH-1004

Golgi apparatus0.038

Rank 5 · LXL04_007542 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00091.32Tubulin52-264 aa

PF03953.23Tubulin_C314-443 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007542	`PF00091.32`	Tubulin	52	264	3e-61	207.8
LXL04_007542	`PF03953.23`	Tubulin_C	314	443	6.9e-43	146.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P38557`	Arabidopsis thaliana	Tubulin gamma-1 chain	86.134%	Swiss-Prot	strong database homology
`P38558`	Arabidopsis thaliana	Tubulin gamma-2 chain	86.134%	Swiss-Prot	strong database homology
`O49068`	Oryza sativa subsp. japonica	Tubulin gamma-2 chain	87.033%	Swiss-Prot	strong database homology

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