LXL04_007524 | RubberDandelionOmics

Gene overview

LXL04_007524

Reference: OH-1004 Chr: Chr02 Coordinates: 51253318-51254134 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

540 bp · LXL04_007524|LXL04_007524|OH1004|cDNA

ATGTACTGTAACCATGGCTTCATTTATGTCACCTCACAGGGTACACTGAAGATTTGTCAACTTCAATCTTTGCTTTCCTATGACAATTATTGGCCAGTACAGAAGATTCCTTTAAAGGCGACTCCACATCAAGTAACGTACTTTGCTGAGAAGAACTTATATCCGCTTATAGTTTTTGTTCCTGTCGTAAAGCCTATAAACCAAGTCTTATCATCTATGGTTGATCAAGAATCTGGCCACCAAATCGAGCATGATAATTT...

CDS

Download CDS FASTA

540 bp · LXL04_007524|LXL04_007524|OH1004|CDS

ATGTACTGTAACCATGGCTTCATTTATGTCACCTCACAGGGTACACTGAAGATTTGTCAACTTCAATCTTTGCTTTCCTATGACAATTATTGGCCAGTACAGAAGATTCCTTTAAAGGCGACTCCACATCAAGTAACGTACTTTGCTGAGAAGAACTTATATCCGCTTATAGTTTTTGTTCCTGTCGTAAAGCCTATAAACCAAGTCTTATCATCTATGGTTGATCAAGAATCTGGCCACCAAATCGAGCATGATAATTT...

Protein

Download Protein FASTA

179 aa · LXL04_007524|LXL04_007524|OH1004|PROTEIN

MYCNHGFIYVTSQGTLKICQLQSLLSYDNYWPVQKIPLKATPHQVTYFAEKNLYPLIVFVPVVKPINQVLSSMVDQESGHQIEHDNLNIDGNYTVEEFEVRILGPESSGGPWQTKGTIRMQSSENALTVRVVTLSVSSNQFYSTISDIVNFRANYIFGPRVYIIFSALVPKSSLAMRIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007524`
TK1151 ID	TkA03G186610
OH-1004 ID	LXL04_007524
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.540 / OH-1004 75.419 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007524

Location Chr02:51253318-51254134 (+)

Description Similar to CPSF160: Cleavage and polyadenylation specificity factor subunit 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51660`	CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0252200`	CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007524 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0031123 RNA 3'-end processing Biological Process

GO:0031124 mRNA 3'-end processing Biological Process

GO:0180012 co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005847 mRNA cleavage and polyadenylation specificity factor complex Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003723 RNA binding Molecular Function

GO:0019899 enzyme binding Molecular Function

GO:0035925 mRNA 3'-UTR AU-rich region binding Molecular Function

KEGG gene cross-reference

ath:AT5G51660

hsa:29894

mmu:94230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.431

Rank 1 · LXL04_007524 · OH-1004

Nucleus0.430

Rank 2 · LXL04_007524 · OH-1004

Mitochondrion0.100

Rank 3 · LXL04_007524 · OH-1004

Cell membrane0.094

Rank 4 · LXL04_007524 · OH-1004

Endoplasmic reticulum0.084

Rank 5 · LXL04_007524 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FGR0`	Arabidopsis thaliana	Cleavage and polyadenylation specificity factor subunit 1	73.333%	Swiss-Prot	strong database homology
`Q7XWP1`	Oryza sativa subsp. japonica	Probable cleavage and polyadenylation specificity factor subunit 1	59.259%	Swiss-Prot	strong database homology

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