LXL04_007521 | RubberDandelionOmics

Gene overview

LXL04_007521

Reference: OH-1004 Chr: Chr02 Coordinates: 51231787-51233332 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1014 bp · LXL04_007521|LXL04_007521|OH1004|cDNA

ATGCTTAGTCATCATGGGCGTTTCTGGTTTCTTGTACAGTTCGGGATCCGTTGTGCGGTTTGCGTGATTTCCCCAAAATGCCCTTTTGGATACGATTCTCAGACTTTCAAGATCGGCCCTTTTAGTTGCATAATATGCCAAGCCCTCCTCTTCGAGTGTAACAGATGTGTCCCTTGTACTCACGTCTTTTGCAAAGCATGTATATCAAGATTCAGTGATTGTCCACTATGTGGTGCTGACATTGAGAAGATAGAAGCTGA...

CDS

Download CDS FASTA

1014 bp · LXL04_007521|LXL04_007521|OH1004|CDS

ATGCTTAGTCATCATGGGCGTTTCTGGTTTCTTGTACAGTTCGGGATCCGTTGTGCGGTTTGCGTGATTTCCCCAAAATGCCCTTTTGGATACGATTCTCAGACTTTCAAGATCGGCCCTTTTAGTTGCATAATATGCCAAGCCCTCCTCTTCGAGTGTAACAGATGTGTCCCTTGTACTCACGTCTTTTGCAAAGCATGTATATCAAGATTCAGTGATTGTCCACTATGTGGTGCTGACATTGAGAAGATAGAAGCTGA...

Protein

Download Protein FASTA

337 aa · LXL04_007521|LXL04_007521|OH1004|PROTEIN

MLSHHGRFWFLVQFGIRCAVCVISPKCPFGYDSQTFKIGPFSCIICQALLFECNRCVPCTHVFCKACISRFSDCPLCGADIEKIEADTNLQSVVDRFIDGHARIKRSPVDTDEKEVIGEKKTVIYEDVSLERGAFLVQQAMRAFRANNVESAKSRLSLCAQDIREQLEIAGNTSELCSQLGAVLGMLGDCCRAMGDGTSAVGYFDESVTFLSKVETDDLEVTHTLSVSLNKIGDLKYYEGDLKAARDHYFRALDVRRNAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007521`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007521

Location Chr02:51231787-51233332 (+)

Description Similar to NCA1: Protein NCA1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54360`	Has holdase chaperone activity that may fold catalase to a functional structure.	Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.2013 · DOI: 10.1105/tpc.113.117192 A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135095

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007521 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031398 positive regulation of protein ubiquitination Biological Process

GO:0031648 protein destabilization Biological Process

GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0043069 negative regulation of programmed cell death Biological Process

GO:0044779 meiotic spindle checkpoint signaling Biological Process

GO:0044818 mitotic G2/M transition checkpoint Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G54360

dre:564271

mmu:231600

xla:734287

xtr:395009

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.620

Rank 1 · LXL04_007521 · OH-1004

Nucleus0.340

Rank 2 · LXL04_007521 · OH-1004

Mitochondrion0.096

Rank 3 · LXL04_007521 · OH-1004

Golgi apparatus0.078

Rank 4 · LXL04_007521 · OH-1004

Peroxisome0.076

Rank 5 · LXL04_007521 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13424.13TPR_12182-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007521	`PF13424.13`	TPR_12	182	257	3.4e-06	27.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2V1`	Arabidopsis thaliana	Protein NCA1	70.096%	Swiss-Prot	strong database homology

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