LXL04_007426 | RubberDandelionOmics

Gene overview

LXL04_007426

Reference: OH-1004 Chr: Chr02 Coordinates: 48131676-48133193 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

840 bp · LXL04_007426|LXL04_007426|OH1004|cDNA

ATGCCGCCTCTATTCCCATTTCCATCGCCAGTTTCTTGTTTTTCGATCGATTTTTCATCACCATCGCTTGGTGATTCATCACTGACTCGTAGATCTGCCATCGTCGTCTCCAATACAATCTTTCCTTCCACTCAATCTGCCTCCTCTTCCCCATCTTTCATGCTGCCTTGTGCATCCATTTTTTTTCAGAAATTAACTTCGACGCCGGTGACGGTAAGCTTCGACGTCTACCGTGTTTTCTATCTTCGACTCCAGCAAGC...

CDS

Download CDS FASTA

840 bp · LXL04_007426|LXL04_007426|OH1004|CDS

ATGCCGCCTCTATTCCCATTTCCATCGCCAGTTTCTTGTTTTTCGATCGATTTTTCATCACCATCGCTTGGTGATTCATCACTGACTCGTAGATCTGCCATCGTCGTCTCCAATACAATCTTTCCTTCCACTCAATCTGCCTCCTCTTCCCCATCTTTCATGCTGCCTTGTGCATCCATTTTTTTTCAGAAATTAACTTCGACGCCGGTGACGGTAAGCTTCGACGTCTACCGTGTTTTCTATCTTCGACTCCAGCAAGC...

Protein

Download Protein FASTA

279 aa · LXL04_007426|LXL04_007426|OH1004|PROTEIN

MPPLFPFPSPVSCFSIDFSSPSLGDSSLTRRSAIVVSNTIFPSTQSASSSPSFMLPCASIFFQKLTSTPVTVSFDVYRVFYLRLQQATSGDKRSYFYRCSRSRCHQDLQSRSLLRKFIESLAFSARLWVLLAVSSFMKTFAGVLSEMEILGLKHMEGLVQKYSSSCLPLSHGVVTEYWQHELCGCGKETDYNPPKLVVPISNLISHYEDTFIKKLHADSDINNHQYSSLVCGGKSHDQPIRSILKSEDMNIVLLGTLKIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007426`
TK1151 ID	TkA03G172690
OH-1004 ID	LXL04_007426
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007426

Location Chr02:48131676-48133193 (+)

Description Similar to CTC1: CST complex subunit CTC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g09680`	Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation.	Conserved telomere maintenance component 1 interacts with STN1 and maintains chromosome ends in higher eukaryotes.2009 · DOI: 10.1016/j.molcel.2009.09.017 POT1a and components of CST engage telomerase and regulate its activity in Arabidopsis.2014 · DOI: 10.1371/journal.pgen.1004738

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007426 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0010833 telomere maintenance via telomere lengthening Biological Process

GO:0045740 positive regulation of DNA replication Biological Process

GO:0000781 chromosome, telomeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:1990879 CST complex Cellular Component

GO:0003697 single-stranded DNA binding Molecular Function

GO:0042162 telomeric DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G09680

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.594

Rank 1 · LXL04_007426 · OH-1004

Cytoplasm0.299

Rank 2 · LXL04_007426 · OH-1004

Endoplasmic reticulum0.087

Rank 3 · LXL04_007426 · OH-1004

Mitochondrion0.078

Rank 4 · LXL04_007426 · OH-1004

Cell membrane0.074

Rank 5 · LXL04_007426 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`D0EL35`	Arabidopsis thaliana	CST complex subunit CTC1	38.144%	Swiss-Prot	moderate database homology

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