LXL04_007226 | RubberDandelionOmics

Gene overview

LXL04_007226

Reference: OH-1004 Chr: Chr02 Coordinates: 40337411-40338532 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

861 bp · LXL04_007226|LXL04_007226|OH1004|cDNA

ATGTCTACTCTAACGGTCGCAATGTGTTGGAAGCTTGTTACCATCAAGAAGGACAAACTAAACGCAATTGGTGTTGCGGTCTACCACAAACCCGACACAAATGAATGCTACGATGGAAGAAACTATCAACAACCTCCCATGTGTAGATTCAATGACGATCCCAATGCTGCCTGGTACGAGCCTCTACAAGCATGTATCCATAAGATTCCGAAAGGGGAGACAGAGAGAGGTTCACATTGGCCTCAAGAATGGCCAGACCG...

CDS

Download CDS FASTA

861 bp · LXL04_007226|LXL04_007226|OH1004|CDS

ATGTCTACTCTAACGGTCGCAATGTGTTGGAAGCTTGTTACCATCAAGAAGGACAAACTAAACGCAATTGGTGTTGCGGTCTACCACAAACCCGACACAAATGAATGCTACGATGGAAGAAACTATCAACAACCTCCCATGTGTAGATTCAATGACGATCCCAATGCTGCCTGGTACGAGCCTCTACAAGCATGTATCCATAAGATTCCGAAAGGGGAGACAGAGAGAGGTTCACATTGGCCTCAAGAATGGCCAGACCG...

Protein

Download Protein FASTA

286 aa · LXL04_007226|LXL04_007226|OH1004|PROTEIN

MSTLTVAMCWKLVTIKKDKLNAIGVAVYHKPDTNECYDGRNYQQPPMCRFNDDPNAAWYEPLQACIHKIPKGETERGSHWPQEWPDRLHKPPYWLNNSQIGIYGKPKSNDFETDYEHWKRVVRKSYMSQLGIRWSNIRNVMDMRAVYGGFAAALKDLKVWVLNVVNIDSPDTLPIIFERGLFGIYHDWCESFSTYPRSYDLLHADYLFSNLKNRCEIKPVMAEIDRIVRPGGHLIARDESNMIREIEKLLKSLHWEVNLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007226`
TK1151 ID	TkA03G142550
OH-1004 ID	LXL04_007226
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 55.944 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007226

Location Chr02:40337411-40338532 (+)

Description Similar to At3g51070: Probable methyltransferase PMT27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51070`	Probable methyltransferase PMT27.	No verified direct reference in this release
`At5g64030`	Probable methyltransferase PMT26.	No verified direct reference in this release
`At1g29470`	Probable methyltransferase PMT24.	No verified direct reference in this release
`At2g34300`	Probable methyltransferase PMT25.	No verified direct reference in this release
`At1g19430`	Probable methyltransferase PMT28.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007226 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

KEGG gene cross-reference

ath:AT1G19430

ath:AT1G29470

ath:AT2G34300

ath:AT3G51070

ath:AT5G64030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.550

Rank 1 · LXL04_007226 · OH-1004

Extracellular0.162

Rank 2 · LXL04_007226 · OH-1004

Cell membrane0.079

Rank 3 · LXL04_007226 · OH-1004

Endoplasmic reticulum0.076

Rank 4 · LXL04_007226 · OH-1004

Nucleus0.046

Rank 5 · LXL04_007226 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141.23Methyltransf_291-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007226	`PF03141.23`	Methyltransf_29	1	265	8.3e-102	342.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SD39`	Arabidopsis thaliana	Probable methyltransferase PMT27	72.302%	Swiss-Prot	strong database homology
`Q8L7V3`	Arabidopsis thaliana	Probable methyltransferase PMT26	61.189%	Swiss-Prot	strong database homology
`Q6NPR7`	Arabidopsis thaliana	Probable methyltransferase PMT24	61.429%	Swiss-Prot	strong database homology
`Q0WT31`	Arabidopsis thaliana	Probable methyltransferase PMT25	60.791%	Swiss-Prot	strong database homology
`Q9LN50`	Arabidopsis thaliana	Probable methyltransferase PMT28	47.670%	Swiss-Prot	moderate database homology

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