LXL04_007176 | RubberDandelionOmics

Gene overview

LXL04_007176

Reference: OH-1004 Chr: Chr02 Coordinates: 38204127-38205222 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

579 bp · LXL04_007176|LXL04_007176|OH1004|cDNA

ATGGCTACGGAGTCATCCGAGGGAGAAGAAGAAACGAAACTCATGGGAGGGAATCCGCAACTGGTGGTCGATGGCGACCTCCGTGAGATGGCAAAGATGGCTGCTTGGAGCGTTAGCTCTTGTAAACCTGGCAATGGCGTCTCTTCTCTTCGAGATGACAATTATGAAACCTACTGGCAATCAGACGGTGCACAACCACATCTTGTCAACATTCAGTTTCAAAAAAAAGTTAAACTTCAATTAGTTGCACTTTATGTCGA...

CDS

Download CDS FASTA

579 bp · LXL04_007176|LXL04_007176|OH1004|CDS

ATGGCTACGGAGTCATCCGAGGGAGAAGAAGAAACGAAACTCATGGGAGGGAATCCGCAACTGGTGGTCGATGGCGACCTCCGTGAGATGGCAAAGATGGCTGCTTGGAGCGTTAGCTCTTGTAAACCTGGCAATGGCGTCTCTTCTCTTCGAGATGACAATTATGAAACCTACTGGCAATCAGACGGTGCACAACCACATCTTGTCAACATTCAGTTTCAAAAAAAAGTTAAACTTCAATTAGTTGCACTTTATGTCGA...

Protein

Download Protein FASTA

192 aa · LXL04_007176|LXL04_007176|OH1004|PROTEIN

MATESSEGEEETKLMGGNPQLVVDGDLREMAKMAAWSVSSCKPGNGVSSLRDDNYETYWQSDGAQPHLVNIQFQKKVKLQLVALYVDFNLDESYTPSKISIRAGDGFHNLKEIKTVELVKPTGWVHISLSGNDPREAFVNTFMLQIGILSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSSEFITYSTVR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007176`
TK1151 ID	TkA03G130640
OH-1004 ID	LXL04_007176
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007176

Location Chr02:38204127-38205222 (+)

Description Similar to APC10: Anaphase-promoting complex subunit 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g18290`	Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007176 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0007113 endomitotic cell cycle Biological Process

GO:0007346 regulation of mitotic cell cycle Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031145 anaphase-promoting complex-dependent catabolic process Biological Process

GO:0032875 regulation of DNA endoreduplication Biological Process

GO:0032876 negative regulation of DNA endoreduplication Biological Process

GO:0051301 cell division Biological Process

GO:0051445 regulation of meiotic cell cycle Biological Process

GO:0070936 protein K48-linked ubiquitination Biological Process

GO:0070979 protein K11-linked ubiquitination Biological Process

KEGG gene cross-reference

ath:AT2G18290

bta:783986

dme:Dmel_CG11419

hsa:10393

mmu:68999

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.643

Rank 1 · LXL04_007176 · OH-1004

Cytoplasm0.477

Rank 2 · LXL04_007176 · OH-1004

Cell membrane0.045

Rank 3 · LXL04_007176 · OH-1004

Endoplasmic reticulum0.044

Rank 4 · LXL04_007176 · OH-1004

Mitochondrion0.043

Rank 5 · LXL04_007176 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03256.23ANAPC1025-189 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007176	`PF03256.23`	ANAPC10	25	189	3.6e-75	252.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPW2`	Arabidopsis thaliana	Anaphase-promoting complex subunit 10	85.417%	Swiss-Prot	strong database homology

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