LXL04_007140 | RubberDandelionOmics

Gene overview

LXL04_007140

Reference: OH-1004 Chr: Chr02 Coordinates: 37242564-37247038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2783 bp · LXL04_007140|LXL04_007140|OH1004|cDNA

ATTGAACACATGATACAAAACTAAGCATTTTAAGAACAATCAATGAGTGGCGTAGACTTCAGGCGACGATGACTCCACCGGAAACAATGGCGATGATAACAGTTATACTGTTAATACTGCTCTCGATTGATCGGAAAACCCTTGCTGCTGACGATAAACAACCGGGTACAATTGGCCACGGGTACACTCTACGATCTATTGCCTTAGGTTCGTCGGGGAAATCATTGGTCGCTGATCTTCAACTCAATAAGAAGTCTTCC...

CDS

Download CDS FASTA

2715 bp · LXL04_007140|LXL04_007140|OH1004|CDS

ATGACTCCACCGGAAACAATGGCGATGATAACAGTTATACTGTTAATACTGCTCTCGATTGATCGGAAAACCCTTGCTGCTGACGATAAACAACCGGGTACAATTGGCCACGGGTACACTCTACGATCTATTGCCTTAGGTTCGTCGGGGAAATCATTGGTCGCTGATCTTCAACTCAATAAGAAGTCTTCCTTGTTTGGACCTGACATCGATGAACTTCGGCTCTTCGCAAGCTTTGAAACAGCTGATTCTTTGAGGGT...

Protein

Download Protein FASTA

904 aa · LXL04_007140|LXL04_007140|OH1004|PROTEIN

MTPPETMAMITVILLILLSIDRKTLAADDKQPGTIGHGYTLRSIALGSSGKSLVADLQLNKKSSLFGPDIDELRLFASFETADSLRVRITDAKHKRWEIPTHILPRQSRTFDLPSKSQQQIPTELLLSDPTSDLILNLHNTTTGTATQFGFTITRRSTGDILFDTSGTVLVFKDQYLELTSSLPANRSSIYGLGEHTKRSFKLTHNQTLTLWNADIGSANLDLNLYGSHPYYMDVRSPDSDGKVVAGTTHGVLLLNSNGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007140`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007140

Location Chr02:37242564-37247038 (+)

Description Similar to Alpha-glucosidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68560`	Glycoside hydrolase releasing xylosyl residues from xyloglucan oligosaccharides at the non-reducing end.	AXY3 encodes a α-xylosidase that impacts the structure and accessibility of the hemicellulose xyloglucan in Arabidopsis plant cell walls.2011 · DOI: 10.1007/s00425-010-1330-7

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0675700`	Probable alpha-glucosidase Os06g0675700.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007140 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000272 polysaccharide catabolic process Biological Process

GO:0005975 carbohydrate metabolic process Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0045493 xylan catabolic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

KEGG gene cross-reference

ath:AT1G68560

dosa:Os06g0675700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.365

Rank 1 · LXL04_007140 · OH-1004

Extracellular0.233

Rank 2 · LXL04_007140 · OH-1004

Endoplasmic reticulum0.199

Rank 3 · LXL04_007140 · OH-1004

Cytoplasm0.104

Rank 4 · LXL04_007140 · OH-1004

Cell membrane0.069

Rank 5 · LXL04_007140 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13802.13Gal_mutarotas_278-257 aa

PF01055.33Glyco_hydro_31_2nd303-651 aa

PF21365.4Glyco_hydro_31_3rd659-748 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007140	`PF13802.13`	Gal_mutarotas_2	78	257	1.1e-10	42.8
LXL04_007140	`PF01055.33`	Glyco_hydro_31_2nd	303	651	3.9e-124	414.9
LXL04_007140	`PF21365.4`	Glyco_hydro_31_3rd	659	748	1.4e-22	80.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7Y7`	Arabidopsis thaliana	Alpha-xylosidase 1	47.007%	Swiss-Prot	moderate database homology
`Q653V7`	Oryza sativa subsp. japonica	Probable alpha-glucosidase Os06g0675700	58.243%	Swiss-Prot	strong database homology

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