LXL04_007062 | RubberDandelionOmics

Gene overview

LXL04_007062

Reference: OH-1004 Chr: Chr02 Coordinates: 34968648-34978505 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3813 bp · LXL04_007062|LXL04_007062|OH1004|cDNA

ATGACAACCACCGATCTCGCCACCATCTTACCTCGTGTGCTCATAGTATCTAGACGAAGCCTTCGCAAGAACAAGTTCGTTGATTTCGTCGGTGAATATCATCTAGATCTAATAGTCGGTTATGGAGCTGTCCCAGTGATTGTACCTCGAGTGACCGGAGTCAGCTTGCTACTCGAGAGCTTTGAGCCAATTCATGGAGTTCTTCTATGTGAAGGCGAAGACATCGATCCATCACTTTACGAAACGGAATCAACGATTCT...

CDS

Download CDS FASTA

3813 bp · LXL04_007062|LXL04_007062|OH1004|CDS

ATGACAACCACCGATCTCGCCACCATCTTACCTCGTGTGCTCATAGTATCTAGACGAAGCCTTCGCAAGAACAAGTTCGTTGATTTCGTCGGTGAATATCATCTAGATCTAATAGTCGGTTATGGAGCTGTCCCAGTGATTGTACCTCGAGTGACCGGAGTCAGCTTGCTACTCGAGAGCTTTGAGCCAATTCATGGAGTTCTTCTATGTGAAGGCGAAGACATCGATCCATCACTTTACGAAACGGAATCAACGATTCT...

Protein

Download Protein FASTA

1270 aa · LXL04_007062|LXL04_007062|OH1004|PROTEIN

MTTTDLATILPRVLIVSRRSLRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVTGVSLLLESFEPIHGVLLCEGEDIDPSLYETESTILSPEELEEIRMLHSSDTAIDKEKDIIELSLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKELTKISSQPNKLVSHIDYDNYDGHRHMVEIVKNTPLHQWFKDSIEEEKMEIMVNSYHHQGVKRLAQRFKSMAFAPDGLIEGFYDPDSYNPEQGKFIMGLQFHPERMRRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007062`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_007062

Location Chr02:34968648-34978505 (+)

Description Similar to GAT1_2.1: Putative glutamine amidotransferase GAT1_2.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g15040`	Putative glutamine amidotransferase that represses shoot branching.	A nitrogen-regulated glutamine amidotransferase (GAT1_2.1) represses shoot branching in Arabidopsis.2012 · DOI: 10.1104/pp.112.199364
`At5g38210`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3.	No verified direct reference in this release
`At1g18390`	Probable receptor-like serine/threonine-protein kinase involved in abscisic acid (ABA) signaling.	The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.2015 · DOI: 10.1007/s00299-014-1724-2
`At1g66880`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4.	No verified direct reference in this release
`At1g25390`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007062 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042631 cellular response to water deprivation Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016740 transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G15040

ath:AT1G18390

ath:AT1G66880

ath:AT5G38210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.734

Rank 1 · LXL04_007062 · OH-1004

Cytoplasm0.119

Rank 2 · LXL04_007062 · OH-1004

Endoplasmic reticulum0.092

Rank 3 · LXL04_007062 · OH-1004

Nucleus0.082

Rank 4 · LXL04_007062 · OH-1004

Lysosome / Vacuole0.051

Rank 5 · LXL04_007062 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07722.20Peptidase_C2629-255 aa

PF00117.35GATase114-257 aa

PF13947.12GUB_WAK_bind433-497 aa

PF14380.12WAK_assoc567-630 aa

PF14380.12WAK_assoc761-830 aa

PF00069.32Pkinase938-1208 aa

PF07714.24PK_Tyr_Ser-Thr940-1210 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007062	`PF07722.20`	Peptidase_C26	29	255	3.1e-42	145.5
LXL04_007062	`PF00117.35`	GATase	114	257	1.2e-10	42.0
LXL04_007062	`PF13947.12`	GUB_WAK_bind	433	497	5.2e-15	56.3
LXL04_007062	`PF14380.12`	WAK_assoc	567	630	7.3e-27	94.8
LXL04_007062	`PF14380.12`	WAK_assoc	761	830	7.3e-27	94.8
LXL04_007062	`PF00069.32`	Pkinase	938	1208	1.9e-47	162.6
LXL04_007062	`PF07714.24`	PK_Tyr_Ser-Thr	940	1210	2e-47	162.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H0Z4`	Arabidopsis thaliana	Putative glutamine amidotransferase GAT1_2.1	59.719%	Swiss-Prot	weak database homology
`Q8VYG0`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3	46.006%	Swiss-Prot	weak database homology
`P0C5E2`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2	45.819%	Swiss-Prot	weak database homology
`F4HQ17`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4	47.245%	Swiss-Prot	weak database homology
`Q9C6K9`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1	61.143%	Swiss-Prot	weak database homology

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