Gene Card
Gene overview
cDNA / CDS / Protein Sequences
846 bp · LXL04_007004|LXL04_007004|OH1004|cDNA
ATGGGTGAATCTGAGACTAAACCTCAAGTAAAACTGATTTATGACAAGAAGGAGTATGATAAGAATGAGGGATTTCAAGCGGTTAAACAGGAACAAAAACCCAAATTGGTTCAACCGATTTCATCGATGTGCGCTTCTCCTTACGTTTTACAGATGAAGAAACAGAGGGACGGAGTTATGGACGATAAGAAGGTGAGTCCGATAGTGATAGAGAATGGTGATTTCGAAGAAGAAGCTGATTGGTTGTTGGTGGGAAGAAC...
846 bp · LXL04_007004|LXL04_007004|OH1004|CDS
ATGGGTGAATCTGAGACTAAACCTCAAGTAAAACTGATTTATGACAAGAAGGAGTATGATAAGAATGAGGGATTTCAAGCGGTTAAACAGGAACAAAAACCCAAATTGGTTCAACCGATTTCATCGATGTGCGCTTCTCCTTACGTTTTACAGATGAAGAAACAGAGGGACGGAGTTATGGACGATAAGAAGGTGAGTCCGATAGTGATAGAGAATGGTGATTTCGAAGAAGAAGCTGATTGGTTGTTGGTGGGAAGAAC...
Protein
Download Protein FASTA281 aa · LXL04_007004|LXL04_007004|OH1004|PROTEIN
MGESETKPQVKLIYDKKEYDKNEGFQAVKQEQKPKLVQPISSMCASPYVLQMKKQRDGVMDDKKVSPIVIENGDFEEEADWLLVGRTPITGLSTTKGRKLEDNEIVHFAFPNIESKTNSGYWASSRAVNAASGIVRFSTKRSGEIGRLSMEWSKCLISLVNSKKVKILGSCVLNLSLMEEIMLYISFYVHHSIFGEDGNSSWKLESSSNIDSTIYPLLTLFKLPKKSLFQKYIISCILSHFNDVFNRAFLAEFTPEELDT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_007004 |
|---|---|
| TK1151 ID | TkA06G406120 |
| OH-1004 ID | LXL04_007004 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 91.900 |
| Protein coverage (%) | TK1151 96.512 / OH-1004 61.210Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_007004 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:33305870-33307155 (+) | |||||||||
| Description | Similar to RAD5B: DNA repair protein RAD5B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006281 DNA repair Biological Process GO:0006325 chromatin organization Biological Process GO:0009294 DNA-mediated transformation Biological Process GO:0036297 interstrand cross-link repair Biological Process GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process GO:0005634 nucleus Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0004386 helicase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008094 ATP-dependent activity, acting on DNA Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G22750 ath:AT5G43530 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08797.17HIRAN87-175 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_007004 | PF08797.17 | HIRAN | 87 | 175 | 1.2e-09 | 38.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.