LXL04_006910 | RubberDandelionOmics

Gene overview

LXL04_006910

Reference: OH-1004 Chr: Chr02 Coordinates: 29544757-29548306 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1824 bp · LXL04_006910|LXL04_006910|OH1004|cDNA

ATGGGTGGTTGTAGCTCTAAACCCTCGACAGGATCCAAATTTTCCGGTCATTATGATATCGATATTCAGGTTAAAGATAATAACGATAAAGAGGCAGGAGAAACGACGACGACGACGTCGTCTAAGAAGACCACAAAGGACGCAATTGAGGTAGGAAAGAAGTCGCCATTTTTTCCGTTTTACAGTCCGAGTCCAGCTCACAATTGGTTCTCGAAGAAATCGTCTCCGGCGAAATCTCCGGCGCCAAATGCGAGTTCTAA...

CDS

Download CDS FASTA

1824 bp · LXL04_006910|LXL04_006910|OH1004|CDS

ATGGGTGGTTGTAGCTCTAAACCCTCGACAGGATCCAAATTTTCCGGTCATTATGATATCGATATTCAGGTTAAAGATAATAACGATAAAGAGGCAGGAGAAACGACGACGACGACGTCGTCTAAGAAGACCACAAAGGACGCAATTGAGGTAGGAAAGAAGTCGCCATTTTTTCCGTTTTACAGTCCGAGTCCAGCTCACAATTGGTTCTCGAAGAAATCGTCTCCGGCGAAATCTCCGGCGCCAAATGCGAGTTCTAA...

Protein

Download Protein FASTA

607 aa · LXL04_006910|LXL04_006910|OH1004|PROTEIN

MGGCSSKPSTGSKFSGHYDIDIQVKDNNDKEAGETTTTTSSKKTTKDAIEVGKKSPFFPFYSPSPAHNWFSKKSSPAKSPAPNASSNSTPRRFFRRPFPPPSPAKHIKSVLARRHGSVKPNEAAIPEGQESEGVSGLDKSFGFSKHFGSKYELGEEVGRGHFGFTCKAKFKKGELKGQEVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAYEDHEKVYVVMELCEGGELLDRILSRGGKYTEDDAKSVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006910`
TK1151 ID	TkA03G087310
OH-1004 ID	LXL04_006910
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 98.148 / OH-1004 61.120 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006910

Location Chr02:29544757-29548306 (-)

Description Similar to CRK5: CDPK-related kinase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50530`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At2g41140`	May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity).	The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03544.x
`At3g56760`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At1g49580`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006910 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010286 heat acclimation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009931 calcium-dependent protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G49580

ath:AT2G41140

ath:AT3G50530

ath:AT3G56760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.507

Rank 1 · LXL04_006910 · OH-1004

Cytoplasm0.259

Rank 2 · LXL04_006910 · OH-1004

Nucleus0.197

Rank 3 · LXL04_006910 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_006910 · OH-1004

Golgi apparatus0.068

Rank 5 · LXL04_006910 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase151-413 aa

PF07714.24PK_Tyr_Ser-Thr152-405 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006910	`PF00069.32`	Pkinase	151	413	7.9e-73	245.8
LXL04_006910	`PF07714.24`	PK_Tyr_Ser-Thr	152	405	6.7e-35	121.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCS2`	Arabidopsis thaliana	CDPK-related kinase 5	78.146%	Swiss-Prot	strong database homology
`O80673`	Arabidopsis thaliana	CDPK-related kinase 1	74.499%	Swiss-Prot	strong database homology
`Q9LET1`	Arabidopsis thaliana	CDPK-related kinase 7	69.767%	Swiss-Prot	strong database homology
`Q9FX86`	Arabidopsis thaliana	CDPK-related kinase 8	69.608%	Swiss-Prot	strong database homology

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