Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2277 bp · LXL04_006622|LXL04_006622|OH1004|cDNA
atggagcttcagcacgcgtttatggtatctacctctactgatgaaaaggttagtgacgtttcttgtactcaagcatgcatagataaatatacatcctgtcgtgctcaagtagatttactgattagggaaatagaggatcttaagtatgatggttataccttaagaaaagctcaaaaacctattagggagaaactagaagcacaaactaaagattataaacgtgtcaaagatgaactgtatgatttgaaaaacaaagagtt...
2277 bp · LXL04_006622|LXL04_006622|OH1004|CDS
ATGGAGCTTCAGCACGCGTTTATGGTATCTACCTCTACTGATGAAAAGGTTAGTGACGTTTCTTGTACTCAAGCATGCATAGATAAATATACATCCTGTCGTGCTCAAGTAGATTTACTGATTAGGGAAATAGAGGATCTTAAGTATGATGGTTATACCTTAAGAAAAGCTCAAAAACCTATTAGGGAGAAACTAGAAGCACAAACTAAAGATTATAAACGTGTCAAAGATGAACTGTATGATTTGAAAAACAAAGAGTT...
Protein
Download Protein FASTA758 aa · LXL04_006622|LXL04_006622|OH1004|PROTEIN
MELQHAFMVSTSTDEKVSDVSCTQACIDKYTSCRAQVDLLIREIEDLKYDGYTLRKAQKPIREKLEAQTKDYKRVKDELYDLKNKELPMAKYNINRLTAELAAANAKFADAEFNFKKFDVSSEKVEGLGYNQVAPPFNHNYTPPTEPIILKKLVIAGNSAVPIFTQTDKPVPITIEKPKSVPIKIEKPKTVPIKTEKSKPVVFTKPNESNVSTTCADEVLVEDWTEEEDSEPEIVTVLNSVISNNSAFGDVKIVNSVASI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006622 |
|---|---|
| TK1151 ID | TkA04G022960 |
| OH-1004 ID | LXL04_006622 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 97.200 |
| Protein coverage (%) | TK1151 92.670 / OH-1004 23.351Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006622 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:20000011-20002373 (+) | |||||||||
| Description | Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0032196 transposition Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function | |||||||||
| KEGG gene cross-reference | sce:YDR210W-B These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22936.2Pol_BBD506-580 aaPF13976.12gag_pre-integrs615-685 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006622 | PF22936.2 | Pol_BBD | 506 | 580 | 5.1e-16 | 59.5 |
| LXL04_006622 | PF13976.12 | gag_pre-integrs | 615 | 685 | 2.5e-17 | 63.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.