LXL04_006581 | RubberDandelionOmics

Gene overview

LXL04_006581

Reference: OH-1004 Chr: Chr02 Coordinates: 14026246-14029386 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3057 bp · LXL04_006581|LXL04_006581|OH1004|cDNA

ATGAGGGTCTTTCTTCTCTCACTCCTGTTACAAATATTAGCAATTTCCTCCGCCGTTAAACCAGGCCGCTTGCCGGAGCTCGCCGTTAAACCAGGCCGCTTGCCGGAGTATCGAGCTTTGCTTTCCCTAAAAACCTCCATTACAGACGATCCACAATCTTCTCTTTCTTCATGGAACATCTCCACCAGTCACTGTACTTGGTCTGGCGTTACCTGCGACTCTCGACGTCGCGTCACCGCCTTAGATATCTCCGGTGTTAA...

CDS

Download CDS FASTA

3057 bp · LXL04_006581|LXL04_006581|OH1004|CDS

ATGAGGGTCTTTCTTCTCTCACTCCTGTTACAAATATTAGCAATTTCCTCCGCCGTTAAACCAGGCCGCTTGCCGGAGCTCGCCGTTAAACCAGGCCGCTTGCCGGAGTATCGAGCTTTGCTTTCCCTAAAAACCTCCATTACAGACGATCCACAATCTTCTCTTTCTTCATGGAACATCTCCACCAGTCACTGTACTTGGTCTGGCGTTACCTGCGACTCTCGACGTCGCGTCACCGCCTTAGATATCTCCGGTGTTAA...

Protein

Download Protein FASTA

1018 aa · LXL04_006581|LXL04_006581|OH1004|PROTEIN

MRVFLLSLLLQILAISSAVKPGRLPELAVKPGRLPEYRALLSLKTSITDDPQSSLSSWNISTSHCTWSGVTCDSRRRVTALDISGVNITGVLSSDIGNLRHLVNLNVAANNFIGVIPPEISLISGVRVLNLSNNVFNETFPPELASLKLLEVLDLYNNNLTGDLPVGVSEMAALRHLHLGGNYFSGVIPPEYGRFSSLEYLAVSGNELTGAIPPEIGNLSTLKHLYLGYYNTYSGGIPPEIGNLSNLIRFDAANCGLSGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006581`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006581

Location Chr02:14026246-14029386 (-)

Description Similar to BAM1: Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65700`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to CLV1 and BAM3, participates in the detection of the CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At3g49670`	LRR-rich receptor-like kinase (LRR-RLK) implicated in the detection of the CLAVATA-family peptides (CLEs), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At1g75820`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to BAM1 and BAM3, participates in the detection of CLAVATA-family peptides (e.g. CLV3, CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	Stem cell signaling in Arabidopsis requires CRN to localize CLV2 to the plasma membrane.2010 · DOI: 10.1104/pp.109.149930 Receptor-like cytoplasmic kinase MAZZA mediates developmental processes with CLAVATA1 family receptors in Arabidopsis.2021 · DOI: 10.1093/jxb/erab183 A CLE-BAM-CIK signalling module controls root protophloem differentiation in Arabidopsis.2022 · DOI: 10.1111/nph.17791 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At4g20270`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to BAM1 and CLV1, participates in the detection of CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006581 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007172 signal complex assembly Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0030154 cell differentiation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0036289 peptidyl-serine autophosphorylation Biological Process

GO:0045595 regulation of cell differentiation Biological Process

GO:0048229 gametophyte development Biological Process

GO:0048437 floral organ development Biological Process

KEGG gene cross-reference

ath:AT1G75820

ath:AT3G49670

ath:AT4G20270

ath:AT5G65700

mtr:11439632

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.885

Rank 1 · LXL04_006581 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_006581 · OH-1004

Cytoplasm0.062

Rank 3 · LXL04_006581 · OH-1004

Nucleus0.035

Rank 4 · LXL04_006581 · OH-1004

Lysosome / Vacuole0.025

Rank 5 · LXL04_006581 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_236-73 aa

PF13855.13LRR_8125-183 aa

PF23598.2LRR_14126-225 aa

PF23598.2LRR_14215-277 aa

PF13855.13LRR_8270-329 aa

PF23598.2LRR_14283-444 aa

PF13855.13LRR_8341-394 aa

PF13855.13LRR_8535-593 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006581	`PF08263.18`	LRRNT_2	36	73	3.4e-12	47.1
LXL04_006581	`PF13855.13`	LRR_8	125	183	3.2e-37	126.8
LXL04_006581	`PF23598.2`	LRR_14	126	225	5.2e-32	111.7
LXL04_006581	`PF23598.2`	LRR_14	215	277	5.2e-32	111.7
LXL04_006581	`PF13855.13`	LRR_8	270	329	3.2e-37	126.8
LXL04_006581	`PF23598.2`	LRR_14	283	444	5.2e-32	111.7
LXL04_006581	`PF13855.13`	LRR_8	341	394	3.2e-37	126.8
LXL04_006581	`PF13855.13`	LRR_8	535	593	3.2e-37	126.8
LXL04_006581	`PF00069.32`	Pkinase	701	968	6.1e-46	157.6
LXL04_006581	`PF07714.24`	PK_Tyr_Ser-Thr	701	970	3.4e-45	155.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49545`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	78.506%	Swiss-Prot	strong database homology
`Q9M2Z1`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2	74.923%	Swiss-Prot	strong database homology
`Q9SYQ8`	Arabidopsis thaliana	Receptor protein kinase CLAVATA1	56.257%	Swiss-Prot	strong database homology
`O65440`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3	55.637%	Swiss-Prot	strong database homology

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