LXL04_006506 | RubberDandelionOmics

Gene overview

LXL04_006506

Reference: OH-1004 Chr: Chr02 Coordinates: 12485549-12486042 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

375 bp · LXL04_006506|LXL04_006506|OH1004|cDNA

ATGGGCCGAGGTGTAAGCTGTGGCGGAGGACAGAGTTCTTTAGGTTACTTATTGGGTGGTACTGGTCCAGAAGCAGAAACCGACGGGAATGCTCCACCGCCACCAGAGAACCCCACCGATAATGCAACCACCGAGCCTACTAAGGATTCTCCAGAACCTTCCGCCGAGGAGGCTTCTGAGCAGCCACCTGAAGCTTTAAACGTAAACAAAGAAAATCAGCCTGCTGAACCTACCGACGGTACAACAAACAATTATCACAG...

CDS

Download CDS FASTA

375 bp · LXL04_006506|LXL04_006506|OH1004|CDS

ATGGGCCGAGGTGTAAGCTGTGGCGGAGGACAGAGTTCTTTAGGTTACTTATTGGGTGGTACTGGTCCAGAAGCAGAAACCGACGGGAATGCTCCACCGCCACCAGAGAACCCCACCGATAATGCAACCACCGAGCCTACTAAGGATTCTCCAGAACCTTCCGCCGAGGAGGCTTCTGAGCAGCCACCTGAAGCTTTAAACGTAAACAAAGAAAATCAGCCTGCTGAACCTACCGACGGTACAACAAACAATTATCACAG...

Protein

Download Protein FASTA

124 aa · LXL04_006506|LXL04_006506|OH1004|PROTEIN

MGRGVSCGGGQSSLGYLLGGTGPEAETDGNAPPPPENPTDNATTEPTKDSPEPSAEEASEQPPEALNVNKENQPAEPTDGTTNNYHRADGQNCGNFITNRPSTRVHAAPGGNSSLGYLFGDEKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006506`
TK1151 ID	TkA03G043670
OH-1004 ID	LXL04_006506
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006506

Location Chr02:12485549-12486042 (-)

Description Similar to SP1L1: Protein SPIRAL1-like 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26355`	Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.	No verified direct reference in this release
`At1g69230`	Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.	No verified direct reference in this release
`At5g15600`	Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.	No verified direct reference in this release
`At2g03680`	Required for directional control of cell elongation.	The SPIRAL genes are required for directional control of cell elongation in Aarabidopsis thaliana.2000 · DOI: 10.1242/dev.127.20.4443 SPIRAL1 encodes a plant-specific microtubule-localized protein required for directional control of rapidly expanding Arabidopsis cells.2004 · DOI: 10.1105/tpc.017830 The Arabidopsis sku6/spiral1 gene encodes a plus end-localized microtubule-interacting protein involved in directional cell expansion.2004 · DOI: 10.1105/tpc.020644 Role of the SPIRAL1 gene family in anisotropic growth of Arabidopsis thaliana.2006 · DOI: 10.1093/pcp/pcj020 Salt stress-induced disassembly of Arabidopsis cortical microtubule arrays involves 26S proteasome-dependent degradation of SPIRAL1.2011 · DOI: 10.1105/tpc.111.089920

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0417800`	Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006506 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051211 anisotropic cell growth Biological Process

GO:0071472 cellular response to salt stress Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005876 spindle microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0010005 cortical microtubule, transverse to long axis Cellular Component

KEGG gene cross-reference

ath:AT1G26355

ath:AT1G69230

ath:AT2G03680

ath:AT5G15600

dosa:Os03g0417800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.754

Rank 1 · LXL04_006506 · OH-1004

Nucleus0.249

Rank 2 · LXL04_006506 · OH-1004

Cell membrane0.125

Rank 3 · LXL04_006506 · OH-1004

Mitochondrion0.063

Rank 4 · LXL04_006506 · OH-1004

Golgi apparatus0.050

Rank 5 · LXL04_006506 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B3H4F1`	Arabidopsis thaliana	Protein SPIRAL1-like 1	53.333%	Swiss-Prot	strong database homology
`Q9LE54`	Arabidopsis thaliana	Protein SPIRAL1-like 2	47.934%	Swiss-Prot	moderate database homology
`Q9LF22`	Arabidopsis thaliana	Protein SPIRAL1-like 4	45.600%	Swiss-Prot	moderate database homology
`Q9SJW3`	Arabidopsis thaliana	Protein SPIRAL1	44.186%	Swiss-Prot	moderate database homology
`Q7Y1L9`	Oryza sativa subsp. japonica	Protein SPIRAL1-like 1	55.072%	Swiss-Prot	moderate database homology

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